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1D Non-derivative Peak Finder 1.0

  Date Added: July 14, 2013  |  Visits: 251

1D Non-derivative Peak Finder

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PEAKFIND general 1D peak finding algorithm peakfind(x_data,y_data) peakfind(x_data,y_data,upsam) peakfind(x_data,y_data,upsam,gsize,gstd) peakfind(x_data,y_data,upsam,htcut,'cuttype') peakfind(x_data,y_data,upsam,gsize,gstd,htcut,'cuttype') [xpeaks]=peakfind() [xout,yout,peakspos]=peakfind() This function finds peaks without taking first or second derivatives, rather it uses local slope features in a given data set. The function has four basic modes. Mode 1: peakfind(x_data,y_data) simply finds all peaks in the data given by 'xdata' and 'ydata'. Mode 2: peakfind(x_data,y_data,upsam) finds peaks after up-sampling the data by the integer factor 'upsam' -- this allows for higher resolution peak finding. The interpolation uses a cubic spline that does not introduce fictitious peaks. Mode 3: peakfind(x_data,y_data,upsam,gsize,gstd) up-samples and then convolves the data with a Gaussian point spread vector of length gsize (>=3) and standard deviation gstd (>0). The convolution option only works with upsam>=2. Mode 4: peakfind(x_data,y_data,upsam,htcut,'cuttype') up-samples the data, however upsam>=1 in this case, i.e. upsam=1 analyzes the data unmodified. The string 'cuttype' can either be 'abs' (absolute) or 'rel' (relative), which specifies a peak height cutoff which is either: 'abs' - (htcut > 0) peaks are found if peakheights > min(yout) + htcut 'rel' - (0 < htcut < 1) peaks are found if (peakheights-min(yout))/(max(yout)-min(yout)) > htcut Upsampling and convolution allows one to find significant peaks in noisy data with sub-pixel resolution. The algorithm also finds peaks in data where the peak is surrounded by zero first derivatives, i.e. the peak is actually a large plateau. The function outputs the x-position of the peaks in 'xpeaks' or the processed input data in 'xout' and 'yout' with 'peakspos' as the indices of the peaks, i.e. xpeaks = xout(peakspos). If you want the algorithm to find the position of minima, simply input '-y_data'. Peaks within half the convolion box size of the boundary will be ignored (to avoid this, pad the data before processing). Example: x_data = -50:50; y_data =(sin(x_data)+0.000001)./(x_data+0.000001)+1+0.025*(2*rand(1,length(x_data))-1); [xout,yout,peakspos]=peakfind(x_data,y_data,4,6,2,0.2,'rel'); plot(xout,yout,'r','linewidth',2) hold on plot(xout,yout,'b','linewidth',2) plot(xout(peakspos),yout(peakspos),'g.','Markersize',30) xlabel('x') ylabel('y') title(['Found ' num2str(length(peakspos)) ' peaks.']) box on

Requirements: No special requirements
Platforms: Matlab
Keyword: Abs Absolute Large Minyout Noisy Outputs Peakheights Peakheightsminyoutmaxyoutminyout Plateau Processed Rel Significant Subpixel Surrounded Upsampling Xpeaks Xposition
Users rating: 0/10

License: Freeware Size: 10 KB
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