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Sequence Alignment 1.0

Company: seqalign.sourceforge.net
Date Added: November 04, 2012  |  Visits: 183

Sequence Alignment
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A tool to compare two Protein Sequences and show similarities with the help of dotplot.

Requirements: No special requirements
Release Date: November 04, 2012
Platforms: Windows, Mac, Linux
Users rating: 0/10

License: Freeware Size: 49.6 KB
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SEQUENCE ALIGNMENT RELATED
Libraries  -  Algorithm::NeedlemanWunsch 0.02
Algorithm::NeedlemanWunsch is a sequence alignment with configurable scoring. SYNOPSIS use Algorithm::NeedlemanWunsch; sub score_sub { if (!@_) { return -2; # gap penalty } return ($_[0] eq $_[1]) ? 1 : -1; } my $matcher =...
10.24 KB  
Multimedia & Graphics  -  UGENE 1.9.0
UGENE is a comprehensive genome analysis suite that features multiple sequence alignment and a complex HMM builder and search module. for WindowsAll
 
Business  -  FSA For Linux 1.15.6
FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences.
9.61 MB  
Programming  -  MUMmerGPU 2.0
MUMmerGPU is a high-throughput DNA sequence alignment program that runs on nVidia G80-class GPUs. It aligns sequences in parallel on the video card to accelerate the widely used serial CPU program MUMmer.
51.2 KB  
Education  -  NeoBio pre-alpha
NeoBio project consists of Bioinformatics algorithms in Java. What algorithms? The current version consists mainly of (pairwise) sequence alignment algorithms such as the classical dynamic programming methods of Needleman & Wunsch (global...
102.4 KB  
Mathematics  -  Geneious for Mac OS 5.1.5
An automatically-updating library of genomic and genetic data; that provides a fully integrated, visually-advanced toolset for - Sequence alignment and phylogenetics - Sequence analysis, Contig assembly, - primers, restriction analysis - BLAST....
77 MB  
Mathematics  -  MacGDE for Mac OS 2.4
A set of programs for multiple sequence alignment and analysis. The programs use an expandable user interface which allows the addition of external analysis functions without any rewriting of code. The system supports several data types, nucleic...
42.8 MB  
Science  -  BACContigEditor 1.0
BACContigEditor is a simple sequence alignment editing tool, written in Java. It is originally developed for finishing BAC shotgun sequencing projects, but the program could be easily extended to the whole genome project.
867.54 KB  
Science  -  FSA 1.15.7
FSA is a probabilistic multiple sequence alignment algorithm which uses a 'distance-based' approach to aligning homologous protein, RNA or DNA sequences.
9.61 MB  
Science  -  JAligner 0.2
JAligner is an open source Java implementation of the dynamic programming algorithm Smith-Waterman with Gotoh's improvement for biological local pairwise sequence alignment with the affine gap penalty model.
162.36 KB  
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MrAIC.pl is a Perl script for calculating AIC, AICc, BIC, and Akaike weights (for a review, see Burnham and Anderson, 2002) for nucleotide substitution models. Likelihood scores under different models are estimated using PHYML (Guindon and...
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The DICOM Viewer is available as a free Personal Edition for non-commercial usage. This version is limited in its functionality and can only be used for a limited period of time. Note: This version expires on 2012-01-01. Before...
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