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Sequence Alignment 1.0

Date Added: November 04, 2012  |  Visits: 183

Sequence Alignment
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A tool to compare two Protein Sequences and show similarities with the help of dotplot.

Requirements: No special requirements
Release Date: November 04, 2012
Platforms: Windows, Mac, Linux
Users rating: 0/10

License: Freeware Size: 49.6 KB
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Libraries  -  Algorithm::NeedlemanWunsch 0.02
Algorithm::NeedlemanWunsch is a sequence alignment with configurable scoring. SYNOPSIS use Algorithm::NeedlemanWunsch; sub score_sub { if (!@_) { return -2; # gap penalty } return ($_[0] eq $_[1]) ? 1 : -1; } my $matcher =...
10.24 KB  
Multimedia & Graphics  -  UGENE 1.9.0
UGENE is a comprehensive genome analysis suite that features multiple sequence alignment and a complex HMM builder and search module. for WindowsAll
Business  -  FSA For Linux 1.15.6
FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences.
9.61 MB  
Programming  -  MUMmerGPU 2.0
MUMmerGPU is a high-throughput DNA sequence alignment program that runs on nVidia G80-class GPUs. It aligns sequences in parallel on the video card to accelerate the widely used serial CPU program MUMmer.
51.2 KB  
Education  -  NeoBio pre-alpha
NeoBio project consists of Bioinformatics algorithms in Java. What algorithms? The current version consists mainly of (pairwise) sequence alignment algorithms such as the classical dynamic programming methods of Needleman & Wunsch (global...
102.4 KB  
Mathematics  -  Geneious for Mac OS 5.1.5
An automatically-updating library of genomic and genetic data; that provides a fully integrated, visually-advanced toolset for - Sequence alignment and phylogenetics - Sequence analysis, Contig assembly, - primers, restriction analysis - BLAST....
77 MB  
Mathematics  -  MacGDE for Mac OS 2.4
A set of programs for multiple sequence alignment and analysis. The programs use an expandable user interface which allows the addition of external analysis functions without any rewriting of code. The system supports several data types, nucleic...
42.8 MB  
Science  -  BACContigEditor 1.0
BACContigEditor is a simple sequence alignment editing tool, written in Java. It is originally developed for finishing BAC shotgun sequencing projects, but the program could be easily extended to the whole genome project.
867.54 KB  
Science  -  FSA 1.15.7
FSA is a probabilistic multiple sequence alignment algorithm which uses a 'distance-based' approach to aligning homologous protein, RNA or DNA sequences.
9.61 MB  
Science  -  JAligner 0.2
JAligner is an open source Java implementation of the dynamic programming algorithm Smith-Waterman with Gotoh's improvement for biological local pairwise sequence alignment with the affine gap penalty model.
162.36 KB  
Education  -  Sliding Down an Incline Plane Model 1.0
This interactive simulation shows a stone block lying at rest on an inclined plane. Initially, the component of gravity along the plane surface is exceeded by the force of static friction. The slope of the ramp can be increased or decreased,...
51.2 KB  
Education  -  MrAIC 1.4.4 is a Perl script for calculating AIC, AICc, BIC, and Akaike weights (for a review, see Burnham and Anderson, 2002) for nucleotide substitution models. Likelihood scores under different models are estimated using PHYML (Guindon and...
10.24 KB  
Education  -  HapEvolution 1.0
Complex diseases involve multiple genes with low penetration which may be distributed over the genome. Most of the current haplotype association methods are typically restricted in length and consist of alleles from contiguous SNPs. These...
1.61 MB  
Education  -  Three Charges 1.0
In this simulation, you can investigate the idea of the force between charged objects. Initially, the simulation sets up three charged objects, one at each corner of an equilateral triangle. The charges have different magnitudes - your job is to...
1.36 MB  
Education  -  AWclust 3.0
AWclust is easy to use non-parametric population structure analysis software written for R with a GUI interface. Just point and click and you will be on your way to discovering the important cluster information in your SNP data sets.
20.48 KB  
Science  -  Multiple beam interference 1.0
This applet shows multiple beam interferences from a parallel dielectric thin film. The applet lets you study the evolution of reflection and refraction factors when the index of refraction and the absorption of the film and the substrate are...
10.24 KB  
Science  -  Point Charge Forces in 2D Model 1.0
The Point Charge Forces in Two-Dimensions model investigates the electric force that a charged particle experiences in a two-dimensional situation, because of four other nearby charged particles. The net electric force is shown as an arrow...
1.36 MB  
Science  -  Lennard-Jones PVT System Model 1.0
The Lennard-Jones PVT System simulates a two-dimensional system of particles confined between a thermal reservoir and a piston. This computer model is designed to study the equation of state for particles interacting via a simple but realistic...
962.56 KB  
Science  -  Ideal Fermi Gas Integral 1.0
The STP IdealFermiGasIntegral program numerically determines the value of the chemical potential of an ideal Fermi gas for a given temperature and density. STP IdealFermiGasIntegral is part of a suite of Open Source Physics programs...
476.16 KB  
Science  -  JiveX DICOM Viewer 4.4
The DICOM Viewer is available as a free Personal Edition for non-commercial usage. This version is limited in its functionality and can only be used for a limited period of time. Note: This version expires on 2012-01-01. Before...
25.55 MB