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Bio::Metabolic 0.07

Company: bio-metabolic.sourceforge.net

Date Added: November 03, 2012 | Visits: 211

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A Perl Extension for modeling enzymatic (biochemical) reaction networks

Requirements: No special requirements

Release Date: November 03, 2012

Platforms: Windows, Mac, Linux

Users rating: 0/10

License: Freeware

Size: 22.57 KB

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BIO::METABOLIC RELATED

Libraries - Bio::Tree::NodeNHX 1.4 Bio::Tree::NodeNHX is a Simple Tree Node with support for NHX tags. SYNOPSIS use Bio::Tree::NodeNHX; my $nodeA = new Bio::Tree::NodeNHX(); my $nodeL = new Bio::Tree::NodeNHX(); my $nodeR = new Bio::Tree::NodeNHX(); my $node = new...	4.7 MB
Libraries - Bio::Graphics::Glyph::alignment 1.4 Bio::Graphics::Glyph::alignment is the "alignment" glyph. SYNOPSIS See L and L . This is identical to the "graded_segments" glyph, and is used for drawing features that consist of discontinuous...	4.7 MB
Libraries - Bio::OntologyIO::simplehierarchy 1.4 Bio::OntologyIO::simplehierarchy is a base class parser for simple hierarchy-by-indentation type formats. SYNOPSIS use Bio::OntologyIO; # do not use directly -- use via Bio::OntologyIO my $parser = Bio::OntologyIO->new ( -format =>...	4.7 MB
Libraries - Bio::Tools::Run::PiseWorkflow 1.4 Bio::Tools::Run::PiseWorkflow is a class to create a Pise workflow using Pise application objects as methods. A workflow is defined by a set of methods which all instanciate the class PiseApplication. SYNOPSIS # First, create a...	829.44 KB
Libraries - Bio::Tools::AlignFactory 1.4 Bio::Tools::AlignFactory is a base object for alignment factories. SYNOPSIS You wont be using this as an object, but using a dervied class like Bio::Tools::pSW Holds common Alignment Factory attributes in place.	4.7 MB
Libraries - Bio::Tools::Run::TribeMCL 1.4 Bio::Tools::Run::TribeMCL is a method for clustering proteins into related groups, which are termed protein families. SYNOPSIS use Bio::Tools::Run::TribeMCL; use Bio::SearchIO; # 3 methods to input the blast results # straight forward raw...	829.44 KB
Libraries - Bio::NEXUS::Block 0.67 Bio::NEXUS::Block is a Perl module that provides useful functions for blocks in NEXUS file (parent class). SYNOPSIS This module is the super class of all NEXUS block classes. It is not used specifically from a program; in other words, you dont...	153.6 KB
Libraries - Bio::NEXUS::Node 0.67 Bio::NEXUS::Node is a Perl module that provides functions for manipulating nodes in trees. SYNOPSIS new Bio::NEXUS::Node; METHODS new Title : new Usage : $node = new Bio::NEXUS::Node(); Function: Creates a new Bio::NEXUS::Node object...	153.6 KB
Libraries - Bio::NEXUS::TaxaBlock 0.67 Bio::NEXUS::TaxaBlock is a Perl module that represents TAXA block of a NEXUS file. SYNOPSIS if ( $type =~ /taxa/i ) { $block_object = new Bio::NEXUS::TaxaBlock($type, $block, $verbose); } If a NEXUS block is a taxa block, this module...	153.6 KB
Libraries - Bio::NEXUS::TreesBlock 0.67 Bio::NEXUS::TreesBlock is a Perl module that represents TREES block of a NEXUS file. SYNOPSIS if ( $type =~ /trees/i ) { $block_object = new Bio::NEXUS::TreesBlock( $block_type, $block, $verbose ); } If a NEXUS block is a Trees Block, this...	153.6 KB

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