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Sylamer 1.0

Company: Stijn van Dongen
Date Added: June 16, 2012  |  Visits: 247

Sylamer

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Sylamer was designed as a Java-based tool for finding significantly over or under-represented words in sequences according to a sorted gene list.

Typically it is used to find significant enrichment or depletion of microRNA or siRNA seed sequences from microarray expression data.

Sylamer is extremely fast and can be applied to genome-wide datasets with ease. Results are plotted in terms of a significance landscape plot. These plots show significance profiles for each word studied across the sorted genelist.

Requirements: No special requirements
Release Date: June 16, 2012
Platforms: Windows All
Keyword: Find Sequence Gene Gene Sequence Genetics Sequence Sequence Finder Sylamer
Users rating: 0/10

License: Freeware
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