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ClaMS New

Company: The Regents of the University of Califor
Date Added: August 20, 2012  |  Visits: 206

ClaMS

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ClaMS is a handy application specially designed to offer you a sequence composition-based classifier for metagenomic sequences.

ClaMS works by capturing signatures of each sequence based on the sequence composition. Each sequence is modeled as a walk in a de Bruijn graph with underlying Markov chain properties.

ClaMS captures stationary parameters of the underlying Markov chain as well as structural parameters of the underlying de Bruijn graph to form this signature.

In practice, for each sequence to binned, such a signature is computed and matched to similar signatures computed for the training sets. The best match that also qualifies the normalized distance cut-off wins. In the case that the best match does not qualify this cut-off, the sequence remains un-binned.
for WindowsAll

Requirements: No special requirements
Release Date: August 20, 2012
Platforms: WindowsAll
Keyword: Analyze Metagenomic Sequences Clams Classification Classify Classify Sequence Metagenomic Sequences Analysis Sequence
Users rating: 0/10

License: Freeware
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