Visualize Molecular Structures

gOpenMol is a tool for the visualization and analysis of molecular structures and their chemical properties. The program uses Tcl/Tk scripting engine and can thus be easily extended without modifying the kernel code. gOpenMol can also be extended by writing extensions using sharable objects...

An award-winning Mac program for building, displaying and manipulating all kinds of crystal and molecular structures - with real-time photo-realistic graphics and 'out-of-the-screen' 3D display. CrystalMaker allows visualization of massive structures, with fast bond and polyhedra generation and...

Although a large number of tools for the three-dimensional visualization of molecular structures exists, it often proved convenient to tailor a visualization tool specifically for a certain purpose. In BALL, we chose two complementary approaches. First, we wanted to give the user the full...


Platforms: Mac

The Graph Visualization Framework is a set of Java 2 packages that canserve as a foundation for applications that manipulate or visualize graph structures. 'Royere' is built on the GVF and includes XMLsupport, SVG output, pluggable layouts, editing.


Platforms: Windows, Mac, Linux

Janocchio is an application or applet for viewing 3D molecular structures and calculating NMR couplings and NOEs


Platforms: Windows, Mac, Linux

Toxtree is a full-featured and flexible user-friendly open source application, which is able to estimate toxic hazard by applying a decision tree approach. Toxtree could be applied to datasets from various compatible file types. User-defined molecular structures are also supported - they could...


Platforms: Mac

Bioclipse project is aimed at creating a Java-based, open source, visual platform for chemo- and bioinformatics. Bioclipse, as any RCP application, is based on a plugin architecture that inherits basic functionality and visual interfaces from Eclipse, such as help system, software updates,...


Platforms: Windows, XP, 2003, Windows Vista, 7, 7x64

BALLView is our standalone molecular modeling and visualization application. Furthermore it is also a framework for developing molecular visualization functionality. It is available free of charge under the GPL for Linux, Windows and MacOS. It provides fast OpenGL-based visualization of...


Platforms: Windows

PyMOL is a user-sponsored molecular visualization system on an open-source foundation. Please support development of this open, effective, and affordable software by purchasing an incentive copy, which is pre-built and comes with maintenance and support. PyMOL can interpret over 30 different...


Platforms: Windows, Mac, Linux

gMol is an interactive visualization system used to display and manipulate 3-dimensional models of scientific data, such as molecular structures and surfaces. It contains both OpenGL and web browser widgets that enable flexible user interfaces.


Platforms: *nix

MolViewX is the OS X version of MolView. Nearly all of the features of MolView have been ported. MolViewX now outputs POV-Ray files for rendering. MolViewX also outputs VRML files for Strata 3DPro and a number of UNIX based applications. MolViewX can read several types of coordinate files and...


Platforms: Mac

Open3DQSAR is an open-source tool aimed at pharmacophore exploration by high-throughput chemometric analysis of molecular interaction fields (MIFs). Open3DQSAR can generate steric potential, electron density and MM/QM electrostatic potential fields; furthermore, it can import GRIDKONT binary...


Platforms: Windows

Open3DQSAR is an open-source tool aimed at pharmacophore exploration by high-throughput chemometric analysis of molecular interaction fields (MIFs). Open3DQSAR can generate steric potential, electron density and MM/QM electrostatic potential fields; furthermore, it can import GRIDKONT binary...


Platforms: Mac

SketchEl is an interactive chemical molecule sketching tool, and molecular spreadsheet data entry application. The feature set provided by the molecular sketcher is largely limited to the minimum features required to conveniently edit diagram representations of small molecule structures....


Platforms: Windows

Open3DQSAR is an open-source tool aimed at pharmacophore exploration by high-throughput chemometric analysis of molecular interaction fields (MIFs). Open3DQSAR can generate steric potential, electron density and MM/QM electrostatic potential fields; furthermore, it can import GRIDKONT binary...


Platforms: Linux

Open3DQSAR is an open-source tool aimed at pharmacophore exploration by high-throughput chemometric analysis of molecular interaction fields (MIFs). Open3DQSAR can generate steric potential, electron density and MM/QM electrostatic potential fields; furthermore, it can import GRIDKONT binary...


Platforms: Windows

Viewmol is a graphical front end for computational chemistry programs. It is able to graphically aid in the generation of molecular structures for computations and to visualize their results.


Platforms: Mac, BSD, Linux

The brand new AbszOrb 3.0 is a game, it's a program, it's a screensaver - it's three mints in one. The new version of AbszOrb has been completely revamped. You can now texture orbs, arrange them in your universe, and fly freely throughout the whole universe or particle system. The new version...

yEd is built using lightweight Swing components and can run on any platform with a Java Runtime Environment available. Key features "yEd Graph Editor": - Several highly sophisticated layout algorithms have been implemented amd hey can be used either to automatically arrange the items or to...


Platforms: Windows, Mac, *nix, Java, BSD Solaris

Tree::Visualize is a Perl module for visualizing Tree structures. SYNOPSIS use Tree::Visualize; use Tree::Binary; my $tree = Tree::Binary->new("*") ->setLeft( Tree::Binary->new("+") ->setLeft(Tree::Binary->new("2")) ->setRight(Tree::Binary->new("2")) ) ->setRight(...


Platforms: *nix