Snp

Device::SNP is a Perl extension for the GE Fanuc SNP-X serial protocol as used by GE Fanuc DataPanel data terminals. See http://www.gefanuc.com/en/ProductServices/VisPCSolutions/DataPanel/index.html SYNOPSIS use Device::SNP; my $s = new Device::SNP::Slave( Portname => /dev/ttyUSB0, Debug...

SNP Analyser was developed as an easy-to-use and useful utility for the efficient analysis and management of Affymetrix SNP DMET Data analysis. SNP Analyser is a software that was designed with the help of the Java programming language.

The annotation files for Illumina SNP genotyping platforms generated for performing Homozygosity Haplotype analysis


Platforms: Windows, Mac, Linux

GSA-SNP is a gene set analysis software that can process SNP data as well as gene and haplotype data.


Platforms: *nix

AnnTools is an efficient, fast and robust bioinformatics tool annotating SNP and CNV calls generated from sequencing and microarray data.


Platforms: Mac, BSD, Linux

Genevar (GENe Expression VARiation) is a platform of database and web services for the integrative analysis and visulization of SNP-gene assocaitaions in eQTL studies.


Platforms: Windows, Mac, Linux

MAGMA: Multiobjective Analyzer for Genetic Marker AcquisitionA genetic algorithm for generating SNP tiling paths from a large SNP databasebased on the competing objectives of cost (number of SNPs) and coverage (haplotype blocks):Hubley R., Zitzler


Platforms: Windows, Mac, Linux

GETHGVBASE returns polymorphism data from the human genome variation db http://hgvbase.cgb.ki.seHGVDATA = gethgvbase(SNPID) reads in a %hgvbase web record fromEMBL and creates a structure DATA %containing fields correspondingto the hgvBase keywords.FIELDNAME DESCRIPTIONS: a complete %description...


Platforms: Matlab

This script creates a binary spreadsheet to indicate if there exists a rare variant in the window centered about the current marker. At chromosome edges, the maximum number of markers up to the window size is used without running into the next chromosome.


Platforms: Mac

Using Affymetrix CEL files as its source, this script combines quantile normalized SNP A and B probe intensities for each marker into a theta value, then calculates B-Allele Frequencies for each marker. For information on accessing B Allele Frequencies for Illumina data,


Platforms: Mac

libspectrum is a library designed to make the input and output of some ZX Spectrum emulator files slightly easier. libspectrum is intended to be usable on Unix variants, Mac OS X and Win32. Currently, it is mainly (only?) used by Fuse, but other Spectrum emulator and utility authors are...


Platforms: *nix

PGDSpider was built using the Java programming language as a conversion app for population genetics and genomics programs. The software facilitates the data exchange possibilities between programs for a vast range of data types (e.g. DNA, RNA, NGS, microsatellite, SNP, RFLP, AFLP, multi-allelic...


Platforms: Windows

The advent of massively parallel sequencing technologies has fundamentally changed the study of genetics. New platforms like the Illumina GAIIx and the Roche GS yield unprecedented levels of sequencing throughput. The analysis and interpretation of data from next-generation sequencing platforms...


Platforms: Windows

Genovar is a stand-alone software built using the Java programming language in order to detect unknown genomic variants. The program can also analyze SNP-related copy number variant regions, and comprehensively visualize genomic data such as array CGH and sequence alignments results.


Platforms: Windows

This 30 days fully functional demo of CLC DNA Workbench provides a wide range of advanced DNA sequence analyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench. Some analyses are: - Assembly of DNA sequencing data - Graphically and...


Platforms: Mac

AWclust is easy to use non-parametric population structure analysis software written for R with a GUI interface. Just point and click and you will be on your way to discovering the important cluster information in your SNP data sets.


Platforms: Windows, Mac, Linux

bint was written for the purpose of obtaining subsets of intensity data from genotyping assays. Either the X & Y intensities for creating cluster plots or Log R Ratio and B Allele Frequencies for CNV detection. Extracting the data for individual SNP/CNV markers or individual samples was slow...


Platforms: Windows, Mac, BSD, Linux

dbSNPtool starts a GUI to return polymorphism data from dbSNPwww.ncbi.nih.gov/SNP Calling dbsnptool start the GUI, SNP % records are returned based on keyword. Each result is presented in a % listbox, clicking on the entry loads the sequence into the sequence %viewer. Information is presenting...


Platforms: Matlab

AWclust is easy to use non-parametric population structure analysis software written for R with a GUI interface. Just point and click and you will be on your way to discovering the important cluster information in your SNP data sets. The software works well with both small and large SNP...


Platforms: Mac

This script takes genotypes from two different arrays and creates a consensus spreadsheet, and two optional spreadsheets. In order to run this script two spreadsheets of mapped genotype data are required. The spreadsheets may also contain non-marker mapped columns as they will be skipped when...


Platforms: Mac