Serial Analysis Of Gene Expression
Bio::SAGE::Comparison module compares data from serial analysis of gene expression (SAGE) libraries. SYNOPSIS use Bio::SAGE::Comparison; $sage = Bio::SAGE::Comparison->new(); This module provides several tools for comparing data generated from serial analysis of gene expression (SAGE)...
Platforms: *nix
License: Freeware | Size: 8.19 KB | Download (110): Bio::SAGE::Comparison Download |
Bio::SAGE::DataProcessing module processes raw serial analysis of gene expression (SAGE) data. SYNOPSIS use Bio::SAGE::DataProcessing; $sage = Bio::SAGE::DataProcessing->new(); # open sequence and quality files open( READS, "library.fasta" ); open( QUAL, "library.qual.fasta" ); #...
Platforms: *nix
License: Freeware | Size: 19.46 KB | Download (93): Bio::SAGE::DataProcessing Download |
a simple function that returns a colormap, C, for visualizing gene expression. C is just a N x 3 matrix [R G B] describing the range of color values.example usage: C = exp_colormap('blue-yellow',64); colormap(C);called without any arguments, it returns a [3 x 64] green-red colormap.options for...
Platforms: Matlab
License: Freeware | Size: 10 KB | Download (40): Gene Expression Colormap Download |
ErmineJ performs analyses of gene sets in expression microarray data or other genome-wide data that results in rankings of genes. A typical goal is to determine whether particular biological pathways are "doing something interesting" in the data. The software is designed to be used by biologists...
Platforms: Mac
License: Freeware | Size: 21.13 MB | Download (34): ErmineJ Download |
Main Workbench includes all features from CLC DNA Workbench, CLC RNA Workbench, and CLC Protein Workbench, as well as a range of Gene Expression Analysis.
CLC Main Workbench creates a software environment enabling users to make a large number of advanced protein sequence analyses, combined with...
Platforms: Windows, XP, Windows Vista, XPX64, 7, 7x64
License: Freeware | Download (445): CLC Main Workbench Download |
A collection of code, bundled into a single R package, to perform several aspects of data management, image pre-processing, data analysis and statistical inference related to the quantitative analysis of dynamic contrast-enhanced MRI (DCE-MRI).
Platforms: Windows, Mac, Linux
License: Freeware | Size: 4.16 MB | Download (49): R Package for the Analysis of DCE-MRI Download |
In one type of gene expression analysis, fluorescently tagged messenger RNA from different cells are hybridized to a microscopic array of thousands of complimentary DNA spots that correspond to different genes. Illuminated spots emit different color light, indicating which genes are expressed...
Platforms: Matlab
License: Freeware | Size: 4.35 MB | Download (46): DNA MicroArray Image Processing Case Study Download |
Measures of Analysis of Time Series (MATS) toolkit computes a number of different measures of analysis of scalar time series (linear, nonlinear and other statistical measures). It also contains pre-processing tools (transformations and standardizations), data splitting facility, resampled data...
Platforms: Matlab
License: Freeware | Size: 3.41 MB | Download (63): Measures of Analysis of Time Series toolkit (MATS) Download |
Recent studies describe that the level of gene expression between species is positively correlated with the time that has passed since the species split from a common ancestor (Ranz et al., 2006). Moreover, Khaitovich et al. (2004) found a linear relationship between divergence time and...
Platforms: Mac
License: Freeware | Size: 829.44 KB | Download (42): EMOGEE Download |
Maple Tree is a Java based visualization tool used by researchers in the biological sciences to visualize and graphically browse the results of analyses of gene expression data collected from microarray experiments.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 1.17 MB | Download (46): Maple Tree Download |
The application loads microarray data (gene expression ratios) and determines which genes are up- or downregulated by a user-defined ratio cut-off level.
For each experiment, lists of differentially expressed genes are computed. Every list will be compared to every other list, and the number of...
Platforms: Windows
License: Freeware | Download (436): Venn Mapper Download |
Current direct sequence code division multiple access (DS-CDMA) system suffer from Multiple access interference (MAI) and Inter symbol interference (ISI) due to the frequency selective channel. This interference can be avoided by use of Adaptive Beamforming. There are two different minimum...
Platforms: Matlab
License: Freeware | Size: 30.72 KB | Download (43): PERFORMANCE ANALYSIS OF SYMBOL/CHIP BASED MINIMUM Download |
GProcessor is a small, easy to use application specially designed to help you with the statistical analysis of GenePix data, including dye effect adjustment and ANOVA analysis.
Microarray is one of the most fascinating technologies in the millennium. It is a novel invention to exploit DNA...
Platforms: Windows
License: Freeware | Download (451): GProcessor Download |
QTL Reaper analyzes data from progeny of a genetic cross in experimental plants or animals. It seeks the location of genes that affect a heritable trait, and it is specially designed for analysis of gene expression measurements.
Platforms: *nix
License: Freeware | Size: 256 KB | Download (33): QTL Reaper Download |
MATLAB Builder for COM enables you to deploy MATLAB algorithms as COM objects, which can be used on any web server on a Microsoft operating system. The MATLAB based COM object will handle your technical computing, while integrating with a front-end web application built using industry-standard...
Platforms: Matlab
License: Freeware | Size: 2.3 MB | Download (44): Web Deployment Using MATLAB Download |
QTL Reaper analyzes data from progeny of a genetic cross in experimental plants or animals. It seeks the location of genes that affect a heritable trait, and it is specially designed for analysis of gene expression measurements.
Platforms: Mac, Linux
License: Freeware | Size: 252.11 KB | Download (44): QTL Reaper Download |
BCLUST is a small, simple, command prompt based tool specially designed to help you asses reliability of gene clusters from expression data by using consensus tree and bootstrap resampling method.
Because of the rapid development of microarray technologies, many of statistical procedures, most...
Platforms: Windows
License: Freeware | Download (414): BCLUST Download |
This is an extension of my single rotor analysis code.The function is based on the mathematical treatment of rotating rotors in "Principles of Helicopter Aerodynamics" by Dr. J.Gordon Leishman The numerical method does this by using Blade Element Momentum Theory (BEMT) to calculate the inflow...
Platforms: Matlab
License: Freeware | Size: 10 KB | Download (44): Numerical Analysis of a Coaxial Counter-Rotating Rotor Blade System Download |
MeV or Multiple Experiment Viewer is a Java tool to help you with microarray gene expression data analysis. MeV supports 5 input formats, and provides an intuitive graphical interface for clustering, classification, statistical analysis and theme discovery.
Platforms: Windows
License: Freeware | Size: 64.1 MB | Download (442): MeV 4.6.2 Download |
MeV or Multiple Experiment Viewer is a Java tool to help you with microarray gene expression data analysis. MeV supports 5 input formats, and provides an intuitive graphical interface for clustering, classification, statistical analysis and theme discovery.
Platforms: Mac
License: Freeware | Size: 20.6 MB | Download (493): MeV for Mac OS X 4.6.2 Download |