Sequence

trytond_stock_location_sequence is a Python module to add sequence on location object.

ParsInsert efficiently produces both a phylogenetic tree and taxonomic classification for sequences for microbial community sequence analysis. This is a C++ implementation of the Parsimonious Insertion algorithm.

UMLGraph facilitates the declarative specification and drawing of UML class and sequence diagrams. One can specify a class design using the Java syntax complemented by Javadoc tags. Running the UmlGraph doclet on the specification generates a Graphviz diagram specification that can be...


Platforms: *nix

nebseq is a Python module for basic biological sequence manipulations. Import as usual >>> import nebseq Reverse complements The only note here is that revcomp does not check the input sequence to see if it looks like DNA or RNA. >>> nebseq.revcomp('ACGT') 'ACGT' >>>...


Platforms: *nix

LIGR Assembler is a sequence assembly program. It was derived from TIGR Assembler and addresses some of TIGR Assembler's shortcomings.


Platforms: *nix

MUMmerGPU is a high-throughput DNA sequence alignment program that runs on nVidia G80-class GPUs. It aligns sequences in parallel on the video card to accelerate the widely used serial CPU program MUMmer.


Platforms: *nix

sdml2txt is a script to convert SDML to UML Sequence Diagrams. SDML is an extremely simplistic UML Sequence Diagram Markup Language (which is also a hack of mine). Here is some sample SDML along with a textual representation of the diagram it describes: SDML: [Client, Proxy, DNS, Server Query...


Platforms: *nix

A slideshow style screensaver which displays 27 original fractal designs in a random sequence, with upto 23 transitions, and optional captions displaying the titles of the images. These features can be configured by the user.

DoublePics finds and categorizes pictures and movies that are duplicate or similar on a computer system or network. Features: - Tolerates different contrast, color or gamma values - Tolerates different sizes - Recognition of mirrored pictures - Tolerates different file formats. -...


Platforms: Windows, Windows 8, Windows 7, Windows Server

It works like a standard web browser, whereby you enter a URL at the top of the application then click "Go". You can then use the mouse to surf through the sequence you want to record. While you are accessing one page after the other, the URL and - if you submit a POST request - the POSTDATA, are...


Platforms: Windows

Bio2Midi converts the text of a DNA or protein sequence to a MIDI file, which you may immediately audition, or import into any MIDI sequencer for further compositional processing. Choose to listen to the sequences as 4-note DNA bases, or as 20-note protein amino acids, or both at once. You can...


Platforms: Windows

SmartSniff allows you to capture TCP/IP packets that pass through your network adapter, and view the captured data as sequence of conversations between clients and servers. You can view the TCP/IP conversations in Ascii mode (for text-based protocols, like HTTP, SMTP, POP3 and FTP.) or as hex...


Platforms: Windows

Sequences displays a sequence of numbers, the user has to enter the next number in the sequence, the application also has a "training mode", allowing the user to show an equation describing the sequence.


Platforms: Windows

Five clever conundrums with playing cards from NZP, several varieties of puzzles are included in this collection, including stacking, sequence, chess and magic square challenges.


Platforms: Windows

Armagetron is a multiplayer game in 3d that attempts to emulate and expand on the lightcycle sequence from the movie Tron. It's an old school arcade game slung into the 21st century. Highlights include a customizable playing arena, HUD, unqiue graphics, and AI bots. For the more advanced player...


Platforms: Windows, *nix

Is an easy-to-use, reliable and powerful tool for capturing snapshots from your video files. The program supports three tools for capturing snapshots: 1) Single snapshot: Captures a single snapshot from the video. 2) Continuous snapshots: Allows you to capture a portion of the video as a...


Platforms: Windows

Bio::Restriction::Enzyme is a single restriction endonuclease (cuts DNA at specific locations). SYNOPSIS # set up a single restriction enzyme. This contains lots of # information about the enzyme that is generally parsed from a # rebase file and can then be read back use...


Platforms: *nix

pgmfindclip project can automatically find a clipping border for a sequence of pgm images (a fine companion for transcode on Linux). This tool tries to find a suitable clipping border for a series of gray images. It is very useful to automatically extract clipping values for transcoding a movie...


Platforms: *nix

Parses the BASIC programming languages PLAY statement, converting the sounds to a sequence of frequencies. These frequencies can then be saved in numerous formats including Interactive C and the BASIC SOUND statement. The sounds can also be rendered to a WAVE file. Installation There are no...


Platforms: *nix

The P-UMLaut tool allows the user to transform UML 2.0 Sequence Diagrams to semantically equivalent Petri Nets. These Petri Nets may then be simulated using the supplied PN simulator (of PEP descent) or operated on with any tool that can work with high level Petri Nets. By plugging different...


Platforms: *nix