Sequence

Artemis is a free genome browser and annotation tool that allows visualisation of sequence features, next generation data and the results of analyses within the context of the sequence, and also its six-frame translation. Artemis is written in Java, and is available for UNIX, Macintosh and...

ABySS-Explorer is an interactive Java application that employs a novel graph-based representation to display a sequence assembly and associated meta data. The tool was designed with the ABySS sequence assembler in mind and was motivated by the need to examine assembly structure, in particular...

ApneaStaticTrainer is a small, easy to use, handy application specially designed to help you create breath hold sequence for free diving trainings. Basically this tool will help you build O2 and CO2 tables for apnea trainnig and save them as MP3 files. So, if you were looking for a program...


Platforms: Windows

KeyPressList is a simple, easy to use tool designed to emulate pressing a sequence of keys to the foreground window. Each line from input file represents a key combination such as ALT-TAB or CONTROL-SHIFT-A or ...each key has a programmable pre-press delay.


Platforms: Windows

LSC Editor is designed to be a graphical editor and code generator for Live Sequence Charts (LSCs). The code generated follows a simple execution mechanism. It shows a possible execution path. for WindowsAll


Platforms: Windows

Msc-generator is an easy to use, simple tool designed to enable you to draw Message Sequence Charts for telecommunication applications from textual description. Message Sequence Charts (MSCs) are a way of representing entities and message interactions over some time period and are often used in...


Platforms: Windows, XP, Windows Vista, 7

Mallard is a handy, Java based application based on the Pintail algorithm designed to work by comparing evolutionary distances between a query and subject sequence over the length of the 16S rRNA gene (small subunit rRNA), by employing a sampling window of specified size, progressing a fixed...


Platforms: Windows

In this game you will be presented with a sequence of random objects and you need to memorise them and then repeat the sequence. The number of objects will increase as the level increases. If you picked up the wrong object, then the game is over.


Platforms: Windows

BSmapper - Sequence mapper for bisulfite sequencing reads for DNA methylation studies. Can handle Sanger and 454 reads for mapping to whole genomes or target regions.


Platforms: Mac

RNNLIB is a recurrent neural network library for sequence learning problems. Applicable to most types of spatiotemporal data, it has proven particularly effective for speech and handwriting recognition.


Platforms: Mac

A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin) for Unix, Linux, MacOSX and MS Windows.


Platforms: Mac

BlastViewer provides an interactive graphical user interface for the analysis of the reports produced by the BLAST sequence database search system. BlastViewer is an easy to use software designed for everyday biological sequence analysis relying on BLAST. It allows an easy visualisation and...


Platforms: Mac, Java 1.5 or later

This module introduces an alternative syntax a-la shell pipes for sequence-oriented functions, such as filter, map, etc., via certain classes that override __ror__ method.


Platforms: Windows, Mac, *nix, Python, BSD Solaris

This script allows you to sort recursively nested lists if iterable is a mutable sequence type.


Platforms: Windows, Mac, *nix, Python, BSD Solaris

This script defines permIter() function that takes a sequence and returns an iterator that goes through all possible permutations of that sequence.


Platforms: Windows, Mac, *nix, Python, BSD Solaris

This script allows you to quickly select the n-th rank ordered element of a given sequence. It modifies the ordering of the given sequence.


Platforms: Windows, Mac, *nix, Python, BSD Solaris

This script computes an infinite sequence of primes using simple generators. A Python dictionary is used to mark multiples of the generated primes, according to the Sieve of Eratosthenes.


Platforms: Windows, Mac, *nix, Python, BSD Solaris

This script is useful when you want to get the items from a sequence (or other iterable) a batch at a time, including a short batch at the end if need be.


Platforms: Windows, Mac, *nix, Python, BSD Solaris

lvbox displays a sequence of images and text applying transition effects between them. Any slide can be an image or a text, and can have an associated link.Text and image names can be set by using parameters or by writing a text file like this.Using a text file allows to edit the contents very...


Platforms: Java

These programmes are not heavily commented but infact are very simple and intutive to understand the Frequency hopping and related tasks.I have made two files for frequency hopping, one of them is not showing 6 proper impulsive peaks but other programme is infact showing them, In DSSS i have...


Platforms: Matlab