Sdsc Biology Workbench
Thyroid hormones play an essential role for metabolism, growth and differentiation. Therefore, exact regulation of thyroid hormone levels is vital for most organisms. Although the principles of thyrotropic feedback control have been described decades ago we still have not yet gained comprehensive...
Platforms: Mac
License: Freeware | Size: 7.3 MB | Download (427): SimThyr for Mac OS X Download |
An award winning, integrated on-line learning environment where users experience the world of biology through discovery-based learning. GDL was developed as a series of curriculum-aligned and integrated games, modules, and interactive simulations covering an array of topics in biology. To meet...
Platforms: Mac
License: Freeware | Size: 70 MB | Download (47): Genomics Digital Lab for Mac OS Download |
A Molecular Biology software that provides tools with an intuitive interface to assists you in DNA cloning, sequence analysis and visualization. Serial Cloner 2.1 handles Features/Annotations and now allows to define, import and export, customized lists of Features. User can annotate any sequence...
Platforms: Mac
License: Freeware | Size: 18.6 MB | Download (46): Serial Cloner for Mac OS Download |
Clotho is a comprehensive and reliable software for developing and managing synthetic biological systems.
It also provides a mechanism to begin the process of creating standardized data, algorithms, and methodologies for synthetic biology.
This tool allows for the development of independent...
Platforms: Windows
License: Freeware | Download (49): Clotho Download |
Database development IDE for MySQL with many features: visual object editors, schema browser, SQL Insight, two-way visual query builder, templates & catalogs, export and import tools and much more.
Platforms: Windows
License: Freeware | Size: 16.21 MB | Download (516): Database Workbench Lite for MySQL Download |
Workbench for visualizing biological networks (regulatory, interaction, and metabolic). Can be used as a front-end for BNDB datawarehouses, but also as stand-alone tool.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 24.36 MB | Download (45): Biological Network Analyzer Download |
The project aims to extend the PHP scripting language to enable PHP developers to write bioinformatics applications more rapidly than if they had to start from scratch using 'vanilla php'.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 29.78 KB | Download (43): BioPHP - PHP for Computational Biology Download |
BiOrbit is a small Biological information project -- scripts and other useful stuff for the IT & Biology world.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 644.37 KB | Download (52): biorbit Download |
CySBGN adds support to Cytoscape to import, visualize and analyse System Biology Graphical Notation (SBGN) maps.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 1.46 MB | Download (45): CySBGN Download |
DBEdit is a plugin for the Eclipse Workbench. It can be used to explore databases, edit tables directly with a spreadsheet like editor, edit SQL und more.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 1.45 MB | Download (50): DBEdit Plugin for Eclipse Download |
EcoloSim is a Simulation Framework for simple spatial models in biology and ecology, in Java.Typical problems are behavior of a herd of cattle, growth of microbe cells and other populations.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 1.38 MB | Download (44): EcoloSim - Ecology Simulation Framework Download |
A command-line biochemical network compiler for systems biology.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 4.31 MB | Download (45): facile Download |
The HSQLDB Plug-in embebs a HSQLDB pure-java database server into the Eclipse workbench for use as a data repository for Java applications developed using the IDE or for extending HSQLDB itself
Platforms: Windows, Mac, Linux
License: Freeware | Size: 312.72 KB | Download (50): HSQLDB Plug-In for Eclipse Download |
hypKNOWsys aims at developing a Java-based workbench for knowledge discovery and knowledge management. Currently, hypKNOWsys has released two intermediate tools: DIAsDEM Workbench (text mining for semantic tagging) and WUMprep (Web mining pre-processing)
Platforms: Windows, Mac, Linux
License: Freeware | Size: 661.16 KB | Download (47): hypKNOWsys Download |
Platform for parallel computation in the Amazon cloud, including machine learning ensembles written in R for computational biology and other areas of scientific research. Home to MR-Tandem, a hadoop-enabled fork of X!Tandem peptide search engine.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 764.13 KB | Download (45): Insilicos Cloud Army Download |
This software is to help the those connected with Biology,Biotechnology,Bio Informatics.The user can select from the choices of proteins, nucleotides,etc(All those found on NCBI's website)and search for the specific results
Platforms: Windows, Mac, BSD, Linux
License: Freeware | Size: 10.56 KB | Download (47): NCBI Viewer Download |
A Java workbench and toolkit for developing, evaluating, and playing with classical and state-of-the-art optimization algorithms on standard benchmark problem domains; including reference algorithm implementations, graphing, visualizations and much more.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 11.16 MB | Download (54): Optimization Algorithm Toolkit (OAT) Download |
This Java software implements Profile Hidden Markov Models (PHMMs) for protein classification for the WEKA workbench. Standard PHMMs and newly introduced binary PHMMs are used. In addition the software allows propositionalisation of PHMMs.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 6.43 MB | Download (44): pHMM4weka Download |
'Plasmidb' is a database management system (RDMS) used to manipulate, view and store molecular biology information rapidly and easily. Editable information includes: constructed plasmids, clones, standard vectors, primers, antibiotics, enzymes and more
Platforms: Windows, Mac, Linux
License: Freeware | Size: 53.34 MB | Download (45): Plasmidb Download |
The Systems Biology Results Markup Language is a language describing data. Unlike flat data formats, SBRML allows describing the origin of the data as well. This project hosts a library and tools for using SBRML.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 19.07 KB | Download (50): SBRML.NET - Tools & Library for SBRML Download |