Researchers

Maple Tree is a Java based visualization tool used by researchers in the biological sciences to visualize and graphically browse the results of analyses of gene expression data collected from microarray experiments.

The MIPE (Minimal Information for PCR Experiments) format is a XML format that enables genomics researchers to store critical information on PCR experiments.Accompagnying perl scripts are written to read from (dbSTS) or write to a MIPE XML file.

OMEN (On-demand Metadata Extraction Network) is a tomcat based system that allows external users (music information researchers) to request from participating libraries the extraction of features from music archives without violating copyright.


Platforms: Windows, Mac, Linux

A Mass Spectrometer B and Y ion labeling software for proteomics researchers. Peptide sequences can be read from a library and b and y ions will be calculated and sequence can be manipulated by the user (chem. mod. or amino acid mod.)


Platforms: Windows, Mac, Linux

peekabot is a versatile multi-platform 3D visualization tool for robotics researchers and developers.


Platforms: Mac, BSD, Linux

Sanchay is a collection of tools and APIs for language researchers. It has some implementations of NLP algorithms, some flexible APIs, several user friendly annotation interfaces and Sanchay Query Language for language resources.


Platforms: Windows, Mac, Linux

SB-MASE is aimed at students and researchers in AI, for simulation and control of agents and robots. It uses task based decomposition and the subsumption architecture as its core control mechanisms and includes numerous possibilities for adding plug-ins.


Platforms: Windows, Mac, Linux

SciPlore MindMapping is based on FreeMind but extended with features for students & researchers. It integrates mind maps with reference and pdf management (BibTeX support & PDF Bookmark import). Keywords: Mind maps, Mind Mapping, MindMap, JabRef


Platforms: Windows, Mac, Linux

T-RFPred, Terminal-Restriction Fragment Prediction Tool, is a group of Perl scripts that will help researchers to identify the profile peaks of a T-RFLP fingerprint using clone libraries of partially sequenced 16S rRNA genes from the same sample.


Platforms: Windows, Mac, Linux

TML is a Text Mining Library with a focus on LSA (Latent Semantic Analysis) tightly integrated with Apache's Lucene which focuses on ease of use for researchers and developers that want to integrate Text Mining capabilities in their applications.


Platforms: Windows, Mac, Linux

SCARF is a php based system that helps researchers and conference administrators create discussion forums for their papers. It just needs a MySQL backend, a php enabled webserver, and few minutes to set up.


Platforms: Windows, Mac, *nix, PHP, BSD Solaris

BioMail is a small web-based application for medical researchers, biologists, and anyone who wants to know the latest information about a disease or a biological phenomenon. It is written to automate searching for recent scientific papers in the PubMed Medline database.Periodically BioMail does a...


Platforms: *nix, Perl, BSD

This is a GUI that manages DSP analysis functions for wav-files (e.g., speech signals). Two functions (plotps.m and spect.m) are included for starters. You may write your own functions and integrate that into the GUI without much hassle (see instructions in the accompanying readme.txt file)....


Platforms: Matlab

This webinar was recorded on November 20, 2003.Bioinformatics researchers and developers worldwide rely on MATLAB to accelerate scientific discovery and reduce development time. Developers in bioinformatics value the open, component-based architecture of MATLAB, which lets them choose only the...


Platforms: Matlab

You can read 3D ANALYZE MRI image and view it interactively in the three planes. It is simple and helpful for students and researchers in medical image processing.It is not perfect code and you can enhance it and add many things, it is just a good thing to start with.


Platforms: Matlab

For individuals with neurological impairments, functional electrical stimulation (FES) can help make real what was once only imagined: the restoration of movement to paralyzed arms and legs. Depending on the location and severity of the disability, FES can significantly improve quality of life by...


Platforms: Matlab

Stanford Conference And Research Forum, a php based system that helps researchers and conference administrators create discussion forums for their papers. It just needs a MySQL backend, a php enabled webserver, and few minutes to set up. Developed at Stanford University.SCARF is a php based...


Platforms: PHP

WoPeD (Workflow Petri Net Designer) is an open-source software developed at the Cooperative State University Karlsruhe under the GNU Lesser General Public License (LGPL). The main goal of this tool is to provide an easy-to-use software tool for modelling, simulating and analyzing workflow process...


Platforms: Mac

The MIPAV (Medical Image Processing, Analysis, and Visualization) application enables quantitative analysis and visualization of medical images of numerous modalities such as PET, MRI, CT, or microscopy. Using MIPAV's standard user-interface and analysis tools, researchers at remote sites (via...


Platforms: Mac

The FIT-MART Launcher package is a self-contained file for simulating systems of interacting quantum magnetic moments ("spins"). The interactions are modeled using the Heisenberg model, calculations are carried out by numerically diagonalizing the matrix representation of the Heisenberg...


Platforms: Mac