Reads Dna

BSmapper - Sequence mapper for bisulfite sequencing reads for DNA methylation studies. Can handle Sanger and 454 reads for mapping to whole genomes or target regions.

This 30 days fully functional demo of CLC DNA Workbench provides a wide range of advanced DNA sequence analyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench. Some analyses are: - Assembly of DNA sequencing data - Graphically and...

JBoss DNA is a repository and set of tools that make it easy to capture, version, analyze, and understand the fundamental building blocks of information.As models, service and process definitions, schemas, source code, and other artifacts are added to the repository, JBoss DNA "sequences" the...


Platforms: Java

Wild-DNA Slide Show: simple picture slide show using pixel shaders 2.0 to display your pictures with cool effects.


Platforms: Windows

Wild-DNA PortaLaunch: simple popup menu hidden in a systray icon to launch portable apps. In xml customization for the popup menu, and can launch applications without full path. Icons in menu can be used from libraries (exe, dll...) or bitmaps (png, jpg...)


Platforms: Windows, Other

Bowtie, an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers. Please cite: Langmead B, et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25.


Platforms: Windows, Mac, Linux

DNA is an open, flexible and extensible deep network analyzer software server and software architecture for gathering and analyzing network packets, network sessions and applications protocols, passively off enterprise class networks.


Platforms: Windows, Mac, Linux

DNA Replicator is a graphical tool (written in java) that compute the complementary sequence from an input DNA sequence. It's a really easy used application.


Platforms: Windows, Mac, Linux

In one type of gene expression analysis, fluorescently tagged messenger RNA from different cells are hybridized to a microscopic array of thousands of complimentary DNA spots that correspond to different genes. Illuminated spots emit different color light, indicating which genes are expressed...


Platforms: Matlab

Explore stretching just a single strand of DNA using optical tweezers or fluid flow. Experiment with the forces involved and measure the relationship between the stretched DNA length and the force required to keep it stretched. Is DNA more like a rope or like a spring?


Platforms: Mac

kGpsImageTag reads gps data from a text file and correlates it with the photos in the same folder. Use Correlate data to correlate gps data with images. If an image does not have a gps entry, it is extrapolated. Use Hide/Show to hide/show all lines that do not correspond to an image.....


Platforms: *nix

EvRouter reads events from the Linux input layer, and acts on them according to a user-specified set of rules. Currently, EvRouter can map events to X11 key and button presses, XMMS commands, and it can also run shell commands. EvRouter is intended to help legacy applications understand modern...


Platforms: *nix

Bio::Restriction::Enzyme is a single restriction endonuclease (cuts DNA at specific locations). SYNOPSIS # set up a single restriction enzyme. This contains lots of # information about the enzyme that is generally parsed from a # rebase file and can then be read back use...


Platforms: *nix

TVSpectre reads the TV programme information provided by tvmovie.de. Its GUI resembles that of the free, closed source Windows client TVGhost. Installation: - Create the directory "data" unter the installation directory. - Modify TVSpectre.pm to find these directories. - If the included...


Platforms: *nix

use_name_as_alias is a script that reads a GAIM 2.0 BuddyList file (~/.gaim/blist.xml) and assigns aliases based on the contacts name, but only for contacts without a locally user-defined alias. This feature was present in GAIM 1.5, but was removed in 2.0. use_name_as_alias makes use of the...


Platforms: *nix

Sanselan is a Pure-Java library reads & writes a variety of image formats, including fast parsing of image metadata (size, color space, icc profile, etc.). This library is pure Java. Its slow, consequently, but perfectly portable. Its easier to use than ImageIO/JAI/Toolkit (Sun/Javas image...


Platforms: *nix

wmacpi_temp is a Window Maker dock application that reads the temperature file in /proc/acpi in ACPI enabled kernels. In short, it displays the temperature of the processor, updated every minute (in Celsius or Fahrenheit). Installation: 1. make 2. su 3. make install (to put it in...


Platforms: *nix

Milo Calendar is a SuperKaramba script that reads the dates stored by KOrganizer and displays them on your desktop in a clear, neat calendar. The calendar also displays todays date and it can move back/forward months. the descriptions of the events are shown via tooltips. The images for this...


Platforms: *nix

fluxus is program that reads live audio or OSC network messages. Keyboard or mouse input can also be read for simple games development, and a physics engine is included for realtime simulations of rigid body dynamics. The built in scheme code editor runs on top of the renderer (see...


Platforms: *nix

Gnome Terminal Launcher applet reads the profiles from GConf and creates the corresponding menu entry to invoke the gnome-terminal command and its arguments. If you are a system administrator, perhaps a command line junkie, and you deal with a large number of servers on a daily basis, you may...


Platforms: *nix