Pubmed Medline

BioMail is a small web-based application for medical researchers, biologists, and anyone who wants to know the latest information about a disease or a biological phenomenon. It is written to automate searching for recent scientific papers in the PubMed Medline database.Periodically BioMail does a... Platforms: *nix, Perl, BSD

Peptide::Pubmed is a Perl module that can extract peptide sequences from MEDLINE article abstracts. SYNOPSIS use Peptide::Pubmed; $parser = Peptide::Pubmed->new; $in = { PMID => q[15527327], Author => q[Doe JJ, Smith Q], Journal => q[J Biological Foo. 2004;8(2):123-30.], Title => q[Foo,... Platforms: *nix

As part of implementation of CMS for Biomedical applications, it is often a requirement to display publications from well known databases. One such database is called PubMed which is provided National Center for Biotechnology Information, National Library of Medicine and National Institutes of... Platforms: PHP

Lists the direct PDF link next to each search result in PubMed, using API of http://thepaperlink.appspot.com It enhances the existing results display by showing: * Impact Factor of the Journal * Direct link to its PDF file * External page of the article * Faculty 1000 score and comment page link Platforms: *nix

RefSense is the name of both a web interface to PubMed, and a set of command line tools for accessing PubMed. RefSense was previously distributed as Biblio. The web interface provides easy access to PubMeds data as well as some useful tools not found at the actual PubMed site. The command... Platforms: *nix

PubMedMaker is a bibliographic application for those in the fields of medicine and biology. It will convert PubMed data to FileMaker Pro files simply by dragging and dropping. PubMed is a free on-line web site for MEDLINE offered by National Library of Medicine. PubMedMaker also makes Reference... Platforms: Mac

PubMedMaker is bibliography software, similar in principle to EndNote, Pro-Cite and Reference Manager. This shareware program is designed for anyone who wishes to manage medical literature data with FileMaker Pro database. We aim at easy to use and intuitional operation for managing MEDLINE data.... Platforms: Mac

This module allows to import PubMed articles by ID and by Search term into the biblio database. Moderated mass retrieval per Batch API and cronjob as well as automatic updates in cron makes it a valuable addition to the biblio module.Built mostly by agaric on behalf of the Science Collaboration... Platforms: PHP

Papers is an application that manages many PDF files of articles, whose information can be obtained by PubMed. If you have articles as PDF files whose filenames are PMID.pdf (e.g. 10867176.pdf), you can import the articles into iPapers by drag and drop operation. PMID is the unique ID provided by... Platforms: Mac

A fast, efficient search tool for scientists, medical professionals and students who rely on the ability to quickly access the millions of research papers indexed in PubMed. By combining a simple, efficient user interface with fast access to the PubMed database, PubSearch lets you concentrate on... Platforms: Mac

JabRef is an open source bibliography reference manager. The native file format used by JabRef is BibTeX, the standard LaTeX bibliography format. JabRef runs on the Java VM (version 1.5 or newer), and should work equally well on Windows, Linux and Mac OS X. BibTeX is an application and a... Platforms: *nix

JabRef is an open source bibliography reference manager. The native file format used by JabRef is BibTeX, the standard LaTeX bibliography format. JabRef runs on the Java VM (version 1.5 or newer), and should work equally well on Windows, Linux and Mac OS X. Features Advanced BibTeX editor... Platforms: Mac

JabRef is an open source bibliography reference manager. The native file format used by JabRef is BibTeX, the standard LaTeX bibliography format. JabRef runs on the Java VM (version 1.5 or newer), and should work equally well on Windows, Linux and Mac OS X. Bibliographies generated by LaTeX and... Platforms: Windows, Mac, *nix, Java, BSD Solaris

MyPHPBib is a web application for managing bibliographic references. It can import references in several formats (e.g., EndNote and RIS), as well as importing references directly from PubMed. MyPHPBib is written in PHP and uses MySQL as the database. MyPHPBib requires MySQL, PHP, Perl 5, and... Platforms: Windows, Mac, *nix, PHP, BSD Solaris

MyPHPBib is a web application for managing bibliographic references.It can import references in several formats (e.g., EndNote and RIS), as well as importing references directly from PubMed. MyPHPBib is written in PHP and uses MySQL as the database.MyPHPBib requires MySQL, PHP, Perl 5, and... Platforms: PHP

biblio.PLS is a bioperl client for accessing and querying a bibliographic repository. SYNOPSIS Usage: biblio.PLS [vh] biblio.PLS [bcFgOpq] [-l < URL >] biblio.PLS [abcdDeFknmOpqrs] [-l < URL >] -i < collection-ID > biblio.PLS [abcdDeFknmOpqrs] [-l < URL >] - -find < keywords > [-attrs... Platforms: *nix

Pybliographer is a tool for managing bibliographic databases. Pybliographic can be used for searching, editing, reformatting, etc. In fact, its a simple framework that provides easy to use python classes and functions, and therefore can be extended to many uses (generating HTML pages according... Platforms: *nix

Bio::Biblio is a Bibliographic Query Service module. SYNOPSIS use Bio::Biblio; my $biblio = new Bio::Biblio; print $biblio->find (perl)->get_count . "n"; my $collection = $biblio->find (brazma, authors); while ( $collection->has_next ) { print $collection->get_next; } #The new()... Platforms: *nix

Phplabware project is a web-driven database management system. Phplabware runs on a server and is accessed through a web browser. Databases can be designed within a web-interface. Data-entry takes place in forms, which can be altered using phplabwares plugin mechanism. Search results can be... Platforms: *nix

WIKINDX is a free bibliographic and quotations/notes management and article authoring system designed either for single use (on a variety of operating sytems) or multi-user collaborative use across the internet. Features:User: - 37 resource types. - Multi-user mode - create and manage your own... Platforms: Windows, Mac, *nix, PHP, BSD Solaris