Protein Synthesis Diagrams

The Visualization of Protein-Ligand Graphs (VPLG) software package computes and visualizes protein graphs. It works on the super-secondary structure level and uses the atom coordinates from PDB files and the SSE assignments of the DSSP algorithm.

Dot is a very nice graph description language developed at MIT. Combined with Python, it makes an ideal tool to automatically generate diagrams. This script produces beautiful inheritance diagrams for Python classes (and metaclasses too). In particular the recipe allows to display the MRO (Method...

We use the SRK equation of state to compute the correction factor due to gas-phase nonideality as a result of the high pressure applied in the ammonia synthesis. We also compute the extent of reaction. Plots of these two quantities versus pressure for temperature equal to 800K are presented. The...


Platforms: Matlab

The sixth MATLAB Programming Contest, Protein, will run from November 6-13, 2002.This contest concerns a very simplified two-dimensional version of the protein folding problem. Given the amino acid sequence of a simplified protein, your job is to determine a final "optimally folded"...


Platforms: Matlab

Allows the user to calculate her optimum post-workout protein shake recipe and determine right mixture of these three essential ingredients, plus her daily recommended protein dose: 1. Protein 2. Carbohydrate 3. WaterAll calculations are based on her body weight. Install : 1. Unzip the...


Platforms: PHP

RoboBlather is a free text-to-speech application written using .NET 3.0. Rendered speech can be saved to a .WAV file and both talking speed and speech synthesis voice are user-selectable. It works on every version of Windows that support .NET 3.0, which includes every version from Windows XP...


Platforms: Windows, Windows 8, Windows 7

Speech Dispatchers project goal is to provide a device independent layer for speech synthesis through a simple, stable and well documented interface. It takes care of most of the tasks necessary to solve in speech enabled applications. What is a very high level GUI library to graphics, Speech...


Platforms: *nix

Beast project is a powerful music composition and modular synthesis application. Beast is a powerful music composition and modular synthesis application released as free software under the GNU GPL and GNU LGPL, that runs under unix. It supports a wide range of standards in the field, such as...


Platforms: *nix

Bio::Tools::Run::TribeMCL is a method for clustering proteins into related groups, which are termed protein families. SYNOPSIS use Bio::Tools::Run::TribeMCL; use Bio::SearchIO; # 3 methods to input the blast results # straight forward raw blast output (NCBI or WU-BLAST) my @params =...


Platforms: *nix

KtikZ application can help you to create TikZ (from the LaTeX pgf package) diagrams for your publications. It requires qt4, LaTeX (pdflatex), the LaTeX preview-latex-style package and pgf itself. The tool was just a quick hack for making my life easier. It works fine for me. If youd like to...


Platforms: *nix

SuperCollider is a state of the art, realtime sound synthesis server as well as an interpreted Object Oriented language which is based on Smalltalk but with C language family syntax. The language functions as a network client to the sound synthesis server. SuperCollider project was written by...


Platforms: *nix

MWSpeaker project is the worst speech synthesis software ever. You provide a phrase, and MWSpeaker looks up each word in Merriam-Websters online dictionary, downloads the corresponding pronounciations, and plays them in sequence. M-W Speaker takes a phrase (no punctuation please), takes each...


Platforms: *nix

mod_ldap is a synthesis of two older LDAP modules..


Platforms: *nix

Csound is a sound and music synthesis system, providing facilities for composition and performance over a wide range of platforms. Csound is not restricted to any style of music, having been used for many years in at least classical, pop, techno, ambient... Installation: If your...


Platforms: *nix

Tao is a software package for sound synthesis using physical models. It provides a virtual acoustic material constructed from masses and springs which can be used as the basis for building quite complex virtual musical instruments. Tao comes with a synthesis language for creating and playing...


Platforms: *nix

Imager::TimelineDiagram is a Perl extension for creating Timeline Diagrams (designed to show system interaction over time). SYNOPSIS use Imager::TimelineDiagram; use Imager::Font; my $tg = Imager::TimelineDiagram->new( #maxTime => 10, #dataLabelSide => left, labelFont =>...


Platforms: *nix

UML::Sequence is a Perl module to render UML sequence diagrams, often by running the code. SYNOPSIS use UML::Sequence; my $tree = UML::Sequence->new(@methods, @outline, &parse_method); print $tree->build_xml_sequence(Title); To use this package, or see how to use it, see genericseq.pl...


Platforms: *nix

UMLSpeed project is a compiler for a simple, C-style language that allows declaration of UML entities and diagrams. Diagrams can be compiled into SVG and the entities to XMI for use with other tools. Why? - Graphical UML tools in general suck - why should we, as programmers have to drag and...


Platforms: *nix

Glame is a multi-track wave-editor with synthesis capabilities. Glame is targeted to be the GIMP for audio processing. Glame supports non destructive multitrack editing, recording and mixing; realtime effects using native or LADSPA plugins; OSS, ALSA or SGI audio and WAV, Mp3 and Ogg file...


Platforms: *nix

Amber-X is a free granular synthesis application for OS X, based upon Amber by Matt McCabe and Jennifer Bernard. Amber-X takes in WAVs and AIFFs and breaks them into tiny grains, or sub-sounds, then reassembles them in interesting ways defined by the user.Amber-X allows for control over grain...


Platforms: Mac