Protein Hydrolysis

It can be used to measure the total concentration of carbohydrate, protein, and lipid contents from solid wastes.The procedure was formulated to generate the detailed input required for the International Water Association (London, United Kingdom) Anaerobic Digestion Model number 1 (IWA-ADM1).The...

Swiss-PdbViewer (aka DeepView) is an application that provides a user friendly interface allowing to analyze several proteins at the same time. The proteins can be superimposed in order to deduce structural alignments and compare their active sites or any other relevant parts. Amino acid...

Voroprot: an interactive tool for the analysis and visualization of complex geometric features of protein structure We present Voroprot, an interactive cross-platform software tool that provides a unique set of capabilities for exploring geomeric features of protein structure. Voroprot allows...


Platforms: Mac

A GUI program to create the plasmid database forms for BGME lab. This program presents user with a data entry form for entering plasmid information and automatically converts DNA sequence to protein, aligns it, and creates text output file.


Platforms: Mac

The Ramachandran Plot Explorer really offers something new. The Ramachandran Plot Explorer is designed to make it easy to examine the conformation of a polypeptide - through the interactive Ramachandran plot (?Ya* -?Y? angles) and ?Ya*?-angle tool. Simply click on a residue, then drag the marker...


Platforms: Mac

ProDy is a Python package designed for protein structural dynamics analysis. ProDy is developed by Ahmet Bakan and licensed under the GPLv3. New features and functions are constantly being added to ProDy. The following are the main features that are present and working fine: Protein structure...


Platforms: Mac

For this ProfDistS provides a phylogenetic framework that uses individual RNA secondary structures in reconstructing phylogenies based on sequence-structure alignments - using Profile Neighbor Joining (PNJ) with manual or iterative and automatic profile definition. Moreover, ProfDistS can deal...


Platforms: Mac

A Tool that manages Pathway Retrieval, Visualization and Analysis. Import a Gene or Protein Set from any Excel file. Find matching Pathways from KEGG. Integrate, visualze and analyze your Data in Seconds with interactive Force-directed Layout .


Platforms: Mac

Biomatters was founded on the principle of creating software that can be used by all researchers in their daily work. Our technology converts raw data into meaningful, visual information, simplifying research and ultimately improving efficiency. Biomatters???*a*? flagship software packages are:...


Platforms: *nix

Open2Dprot is an open-source proteomics project for the development of bioinformatic tools for n-dimensional protein expression data analysis of quantified protein expression across multiple samples from research experiments.


Platforms: *nix

CUDASW++ software is a public open source software for Smith-Waterman protein database searches on Graphics Processing Units with CUDA. This software have been added to the NVIDIA Tesla Bio Workbench (http://www.nvidia.com/object/swplusplus_on_tesla.html


Platforms: *nix

MSAProbs is an open-source protein multiple sequence ailgnment algorithm, achieving the stastistically highest alignment accuracy on popular benchmarks: BALIBASE, PREFAB, SABMARK, OXBENCH, compared to ClustalW, MAFFT, MUSCLE, ProbCons and Probalign.


Platforms: *nix

APBSmem is a Java-based graphical user interface for Poisson-Boltzmann electrostatics calculations at the membrane. APBS version 1.2.0 or later is required. Features . Protein solvation . Ion solvation . Gating charge calculations


Platforms: *nix

A Low carb Calculator to find unlisted carbs based on a food products nurtrition label. It works by using the formula Calories = (Fat X 9) + (Carbohydrate X 4) + (Protein X 4) . Note that this formula is not perfectly exact, but an approximation. The program takes the difference between the...


Platforms: Windows

The free Simplebean Health Guide quickly calculates your health statistics and targets. To plan a healthy diet, you get important health information such as your BMI, Basal Energy Expenditure, personalized daily calorie requirements and targets, and the target weight for your frame size. The...


Platforms: Windows

This spreadsheet lets you set a personal goal in the number of calories that you want to take in daily. It also let's you set your target percentages for protein, carbohydrate, and fat intake. It comes with a small sample library of foods. But you can enter your own very easily. Note: Requires...


Platforms: Windows

ToBiX is a Morphix-based Linux live CD containing a range of specialist applications for bioinformatics. With this distrubution you just boot from the CD and you have a fully functional LINUX OS distribution with open source applications. Besides using some RAM, ToBiX doesnt touch the host...


Platforms: *nix

BOINC project lets you donate computing power to scientific research projects. Some projects are: - Climateprediction.net: study climate change - Einstein@home: search for gravitational signals emitted by pulsars - LHC@home: improve the design of the CERN LHC particle accelerator -...


Platforms: *nix

ccextractor project is a fast closed captions extractor for MPEG files. ccextractor is mostly a mildly optimized C port of McPoodles excellent but painfully slow Perl script SCC_RIP. It lets you rip the raw closed captions (read: subtitles) data from a number of sources, such as DVD or replay...


Platforms: *nix

Bio::Tools::Run::PiseApplication::fasta is a Bioperl class for sequence database search. Parameters: fasta (Excl) Fasta program query (Sequence) Query sequence File pipe: seqfile seqtype (Excl) Is it a DNA or protein sequence (-n) protein_db (Excl) Protein Database nucleotid_db...


Platforms: *nix