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Protein Hydrolysis freeware
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Protein Hydrolysis

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Released: September 08, 2012  |  Added: September 08, 2012 | Visits: 320

IMPACT Graphical User Interface for a software used to assess adaptive evolution in protein-coding genes. Makes use of several known bioinformatics software. IMPACT is free software, targeted to the scientific community.



Platforms: Windows, Mac, Linux

License: Freeware Size: 9.89 MB Download (43): IMPACT Download

Added: September 08, 2013 | Visits: 398

JNutrition JNutrition is a Nutrition Manager. Create meal plans and let it calculate the calories, carbs, protein and fat of it. It is still not finish, but most functions work.





Platforms: Mac

License: Freeware Size: 2.59 MB Download (46): JNutrition Download

Released: June 15, 2012  |  Added: June 15, 2012 | Visits: 381

JPAT - Java Protein Analysis Tools The JPAT API is a Java API designed to provide developers with tools for calculating the results of protease digestion of proteins and ms/ms fragmentation of peptides. JPAT also contains GUI components for displaying the results. JPAT is a nice way to get


Platforms: Windows, Mac, Linux

License: Freeware Size: 190.09 KB Download (43): JPAT - Java Protein Analysis Tools Download

Released: November 05, 2012  |  Added: November 05, 2012 | Visits: 442

NOCH NOC is a open source development toolkit and a powerful molecular explorer for protein structure visualizing,analysis,crystallographic mapping, modeling, and refinement, Gromacs/Amber MD trajectories displaying,movie making...


Platforms: Windows, Mac, BSD, Linux

License: Freeware Size: 5.75 MB Download (43): NOCH Download

Released: December 22, 2012  |  Added: December 22, 2012 | Visits: 347

Open2Dprot Open2Dprot is an open-source proteomics project for the development of bioinformatic tools for n-dimensional protein expression data analysis of quantified protein expression across multiple samples from research experiments.


Platforms: Windows, Mac, Linux

License: Freeware Size: 7.52 MB Download (45): Open2Dprot Download

Released: August 27, 2012  |  Added: August 27, 2012 | Visits: 247

OpenProspect An open source implementation of a protein threading program based on the energy functions and techniques originally introduced by Prospect.


Platforms: Mac, BSD, Linux

License: Freeware Size: 173.57 MB Download (44): OpenProspect Download

Released: June 07, 2012  |  Added: June 07, 2012 | Visits: 146

ProteinShop ProteinShop is an interactive protein manipulation tool. Users apply their knowledge and intuition to quickly create a set of protein configurations that can be subjected to local or global optimization. More information at http://proteinshop.org


Platforms: Mac, BSD, Linux

License: Freeware Size: 6.73 MB Download (44): ProteinShop Download

Released: December 26, 2012  |  Added: December 26, 2012 | Visits: 454

ProteinTracker A web based application to track protein related reagents including DNA constructs, cell lines, supes, and purified proteins. Supports creating, tracking, and prioritizing requests for transfections and DNA. Includes search and PDF reports.


Platforms: Windows, Mac, Linux

License: Freeware Size: 10.88 MB Download (47): ProteinTracker Download

Released: November 02, 2012  |  Added: November 02, 2012 | Visits: 516

PANTHER PANTHER project: software for modeling of protein sequence and function evolution, and tools for applying these data to the analysis of genome data, expression data and coding SNPs. Details available at http://www.pantherdb.org.


Platforms: Windows, Mac, Linux

License: Freeware Size: 22.4 MB Download (44): PANTHER Download

Released: December 07, 2012  |  Added: December 07, 2012 | Visits: 368

PDB2PQR PDB2PQR is a Python software package that automates many of the common tasks of preparing structures for continuum electrostatics calculations, providing a platform-independent utility for converting protein files in PDB format to PQR format.


Platforms: Windows, Mac, Linux

License: Freeware Size: 6.47 MB Download (48): PDB2PQR Download

Released: August 15, 2012  |  Added: August 15, 2012 | Visits: 424

pHMM4weka This Java software implements Profile Hidden Markov Models (PHMMs) for protein classification for the WEKA workbench. Standard PHMMs and newly introduced binary PHMMs are used. In addition the software allows propositionalisation of PHMMs.


Platforms: Windows, Mac, Linux

License: Freeware Size: 6.43 MB Download (43): pHMM4weka Download

Released: August 12, 2012  |  Added: August 12, 2012 | Visits: 523

PSIsoft - The PSIMAP Software Project PSIMAP is the Protein Structural Interactome MAP, a map of all the domain level protein-protein interactions in the Protein Data Bank (PDB). PSIsoft is an archive of the software used to generate and analyse PSIMAP.


Platforms: Windows, Mac, Linux

License: Freeware Size: 98.61 KB Download (44): PSIsoft - The PSIMAP Software Project Download

Released: November 04, 2012  |  Added: November 04, 2012 | Visits: 270

Sequence Alignment A tool to compare two Protein Sequences and show similarities with the help of dotplot.


Platforms: Windows, Mac, Linux

License: Freeware Size: 49.6 KB Download (43): Sequence Alignment Download

Released: November 15, 2012  |  Added: November 15, 2012 | Visits: 628

StrBio java class libraries Java class libraries for structural biology development: includes protein format conversion tool, printf-based text formatting, Pred2ary secondary structure prediction, neural net library, Hooke-Jeeves global optimizer, and misc. math & statistics.


Platforms: Windows, Mac, Linux

License: Freeware Size: 12.66 MB Download (44): StrBio java class libraries Download

Released: June 13, 2012  |  Added: June 13, 2012 | Visits: 244

Tailor A library and associated applications for searching for patterns in protein structures and measuring geometric parameters.


Platforms: Windows, Mac, Linux

License: Freeware Size: 112.21 KB Download (45): Tailor Download

Released: June 02, 2012  |  Added: June 02, 2012 | Visits: 447

swissPIT The Swiss Protein Identification Toolbox (swissPIT) is a project at the Swiss Institute for Bioinformatics (SIB) in Geneva which aims at the development of an automated analysis system to identify proteins using MS and MS/MS based data.


Platforms: Windows, Mac, Linux

License: Freeware Size: 9.48 MB Download (44): swissPIT Download

Added: July 11, 2013 | Visits: 400

GUI for Basic Local Alignment Search Tool (BLAST) NCBI has an implementation of BLAST algorithm on their website at www.ncbi.nlm.nih.gov/BLAST, which is good if you want to query short DNA or protein sequence against various sequence databases. The problem arises when large sequences need to be BLAST'ed against a sequence database or against...


Platforms: Matlab

License: Freeware Size: 10 KB Download (40): GUI for Basic Local Alignment Search Tool (BLAST) Download

Added: August 11, 2013 | Visits: 321

Find Core Toolbox, version The FindCore Toolbox (v. 1.0b)David Snyder and Gaetano Montelione, (C) 2010This Matlab Toolbox implements the FindCore algorithm described in Snyder, D.A.; Montelione, G.T. PROTEINS: Struct. Funct. Bioinformaticsm, 2005, 59: 673-86. Clustering algorithms for identifying core atom sets and for...


Platforms: Matlab

License: Freeware Size: 10 KB Download (41): Find Core Toolbox, version Download

Added: April 19, 2013 | Visits: 366

Gibbs Motif Sampler MOTIFINFO = GIBBSMOTIFSAMPLER(SEQARRAY,MOTIFVECTOR,ALPHABET,OPTIONS) Searches for the motifs in a set of sequences via Gibbs sampling. seqArray is a cell vector of sequence strings. motifVector is a vector of uniformly-spaced motif widths you wish to optimize. The program iterates over these...


Platforms: Matlab

License: Freeware Size: 10 KB Download (42): Gibbs Motif Sampler Download

Added: September 08, 2013 | Visits: 410

PDBRead PDBRead is a function that will read a Protein Data Bank file into a MATLAB structure.PDB_struct = PDBRead(filename) reads the file corresponding to filename and stores the information contained in this file in the PDB_struct. e.g. PDB_struct = PDBRead('PDBSilk.txt')The file that is being read by...


Platforms: Matlab

License: Freeware Size: 30.72 KB Download (39): PDBRead Download

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