Populations

This program, BayeScan aims at identifying candidate loci under natural selection from genetic data, using differences in allele frequencies between populations. BayeScan is based on the multinomial-Dirichlet model. One of the simplest possible scenarios covered consists of an island model in...

Recodon is a population genetic simulator that generates samples of nucleotide and codon sequences from populations with recombination, migration and growth. The last version includes new codon models (M1, M7 y M8) and new output options.

Each year, governors from all the continents arrive to the Eternal Forest, to replenish their populations, gathering the harvest. Because a long time bodies of local natives assemble on the conveyor, and use the fruits of the tree of life to revive steel mechanisms. The Eternal Forest does not...


Platforms: Windows

A C++ implementation of Dynamic Field Theory (DFT), Amari kind of space-time continuous fields representing activation of populations in neural cortex. Source code for the GUI is available through SVN.


Platforms: Mac, Linux

Inference of recent migration rates between populations using multi-locus marker genotype data.


Platforms: Windows, Mac

Cluster Networks are a new style of neural simulation / neural network modeling, that models networks of neural populations ('clusters') that transform and transmit information using precisely-timed, graded bursts ('pulses' or 'volleys') of firing.


Platforms: Windows, Mac, Linux

This is a discrete event model that has been developed to computationally simulate the many interactions that occur between co-inhabiting populations of bacteriophage lambda and bacteria. Model qualifications are under review for scientific publication.


Platforms: Windows, Mac, Linux

pySTEP or Python Strongly Typed gEnetic Programming: A light Genetic Programming API that allows the user to easily evolve populations of trees with precise grammatical and structural constraints.


Platforms: Windows, Mac, Linux

Add-on to Haploview that picks tagSNPs while allowing for: (1) preferential selection based on user-defined criteria, (2) selection across multiple populations, (3) selection outside defined genomic regions, and (4) picking of surrogate (backup) tagSNPs.


Platforms: Windows, Mac, Linux

This function is a simple but flexible and usefull tool to implement genetic optimization algorithms that work with populations of custom units. This tool allows to customize the fitness function, the stopping criteria and the cross-over and mutation operators. This is a simple tool, written in...


Platforms: Matlab

AWclust is easy to use non-parametric population structure analysis software written for R with a GUI interface. Just point and click and you will be on your way to discovering the important cluster information in your SNP data sets. The software works well with both small and large SNP...


Platforms: Mac

Kandid is a system to evolve graphics. Graphics, in Kandid, is not drawn by hand. Instead new forms can be found using genetic algorithms. To achieve this aim Kandid simulates evolution using sexual reproduction and populations. But there is no fitness function in side the program. Only the user...


Platforms: *nix

This refreshing screensaver takes you to the far ice fields of the Arctic. Incalculable kilometres of frozen wasteland, an ocean almost completely covered in snow, with hardly any sign of life or vegetation.The small vestiges of life in the Arctic are reduced to a few micro-organisms that live in...


Platforms: Windows

Textbender project is a toolkit for collaborative authoring based on structures and methods derived from nature. Structures include a genetic code, populations, and a gene pool. A text is encoded with genetic markup and then distributed out to writers to form a population of copies and a gene...


Platforms: *nix

Evocosm is a C++ Framework for Evolutionary Computing library. Evocosm is a set of classes that abstract the fundamental components of an evolutionary algorithm. Ill list the components here with a bit of introduction; you can review the details of the classes by downloading the code archives...


Platforms: *nix

MOPlot is a handy visualization application specially designed for fast molecular orbitals plotting from the outputs of the Gaussian 03/98/94, Molcas, Gamess/US quantum chemical calculation packages. This Molecular Orbital Plotting Program will prove to be easy-to-use and very efficient. MOPlot...


Platforms: Windows, XP

Luscinia was developed as an accessible and Open Source software for archiving and analyzing field sound recordings (especially of animals). It incorporates an interface to a database, spectrogram measurement algorithms, sound comparison algorithms, and statistical analysis. Luscinia provides...


Platforms: Windows

Create and control lions, elephants, zebras, and more in this unique and deceptively deep game. To succeed youll have to discover the unique behaviors of each species and build food and water sources to suit them. Plan your ecosystem well so that you can help both predator and prey achieve...


Platforms: Mac

EcoloSim is a Simulation Framework for simple spatial models in biology and ecology, in Java.Typical problems are behavior of a herd of cattle, growth of microbe cells and other populations.


Platforms: Windows, Mac, Linux

Open BEAGLE is a C Evolutionary Computation (EC) framework. It provides an high-level software environment to do any kind of EC, with support for tree-based genetic programming; bit string, integer-valued vector, and real-valued vector genetic algorithms; and evolution strategy.The Open BEAGLE...


Platforms: Windows, Mac, *nix, C/C++, BSD Solaris