Pipe Organ Cactus

GEXEC is a scalable cluster remote execution system which provides fast, RSA authenticated remote execution of parallel and distributed jobs. It provides transparent forwarding of stdin, stdout, stderr, and signals to and from remote processes, provides local environment propagation, and is...

mod_auth_shadow is an Apache module for authentication using /etc/shadow. When performing this task one encounters one fundamental difficulty: The /etc/shadow file is supposed to be read/writeable only by root. However, the webserver is supposed to run under a non-root user, such as "nobody"....

Bio::Tools::Run::PiseApplication::fasta is a Bioperl class for sequence database search. Parameters: fasta (Excl) Fasta program query (Sequence) Query sequence File pipe: seqfile seqtype (Excl) Is it a DNA or protein sequence (-n) protein_db (Excl) Protein Database nucleotid_db...


Platforms: *nix

Bio::Tools::Run::PiseApplication::align2model is a Bioperl class for align2model - create a multiple alignment of sequences to an existing model. Parameters: align2model (String) run (String) Run name db (Sequence) Sequences to align (-db) model_file (InFile) Model (-i) pipe:...


Platforms: *nix

Bio::Tools::Run::PiseApplication::consensus is a Perl module. Bioperl class for: CONSENSUS Identification of consensus patterns in unaligned DNA and protein sequences (Hertz, Stormo) References: G.Z. Hertz and G.D. Stormo. Identification of consensus patterns in unaligned DNA and protein...


Platforms: *nix

Bio::Tools::Run::PiseApplication::charge is a Perl module. Bio::Tools::Run::PiseApplication::charge Bioperl class for: CHARGE Protein charge plot (EMBOSS) Parameters: (see also: http://bioweb.pasteur.fr/seqanal/interfaces/charge.html for available values): charge (String) init...


Platforms: *nix

SVK::Command::Help is a Perl module to show help. OPTIONS Optionally svk helps can pipe through a pager, for it is easier to read if the output is too long. For using this feature, please set environment variable SVKPAGER to some pager program. For example: # bash, zsh users export...


Platforms: *nix

Text::WikiFormat is a Perl module for translating Wiki formatted text into other formats. SYNOPSIS use Text::WikiFormat; my $html = Text::WikiFormat::format($raw); The original Wiki web site had a very simple interface to edit and to add pages. Its formatting rules are simple and easy to...


Platforms: *nix

alph implements and analyzes historical and traditional ciphers and codes, such as polyalphabetic, susbstitutional, and mixed employing human-reconstructable algorithms. alph project provides a pipe filter interface in order to encrypt and decrypt block text to acheive transparency. The...


Platforms: *nix

PPort is a simple yet handy automation program and its documented counterpart for interfacing a PC with external devices. With this bundle, one can control any household appliance or electronic device with minimal hassle and practically no changes. Get alph at SourceForge.net. Fast, secure and...


Platforms: *nix

Scalable finger daemon type server for public display of user speciffied files. Ie: pgp keys, contact information. Users edit their data file (supplied as ASCII text file) and the finger daemon displays it on public request. May be used as banner server. Installation: The `configure shell...


Platforms: *nix

pipo project is a quick tool to scan and parse directories recursively and find images based on user-specified criteria, such as independent resolution on both image axis or dominant color searches, and supporting a large number of graphical formats. Similar to a find utility, pipo should prove...


Platforms: *nix

FSHeal aims to be a general filesystem tool that can scan and report vital "defective" information about the filesystem like broken symlinks, forgotten backup files, and left-over object files, but also source files, documentation files, user documents, and so on. It will scan the filesystem...


Platforms: *nix

smtbang is a small SMTP mailer program designed to send mail in chroot environments by sending email through a local smtpd host without a fully-installed server and keeping requirements at minimum. Its useful for building scripts in PHP and other Web-based applications. Installation: The...


Platforms: *nix

Argv is a Perl module that provides an OO interface to an arg vector. SYNOPSIS use Argv; # A roundabout way of getting perls version. my $pl = Argv->new(qw(perl -v)); $pl->exec; # Run /bin/cat, showing how to provide "predigested" options. Argv->new(/bin/cat, [qw(-u -n)],...


Platforms: *nix

Genetic Algorithm File Fitter, or just GAFFitter, is a command-line software written in C++ that arranges--via a genetic algorithm--an input list of items or files/directories into volumes of a certain capacity (target), such as CD or DVD, in a way that the total wastage is minimized. By smartly...


Platforms: *nix

Cluster SSH opens terminal windows with connections to specified hosts and an administration console. Any text typed into the administration console is replicated to all other connected and active windows. This tool is intended for, but not limited to, cluster administration where the same...


Platforms: *nix

Libtubo Interprocess Communication is a small and simple library that can run processes in the background and communicate via the stdout, stderr, and stdin file descriptors. The functionality of libtubo is similar to the glib function g_spawn_async_with_pipes(), except that all pipe setup and...


Platforms: *nix

Embperl::Intro is an introduction to Embperl. Embperl has started as a Perl module for simply embedding Perl into HTML and has grown to a full featured system to build dynamic content (not only) under mod_perl. The version 1.x focus on HTML documents, also it could be used for any sort of ascii...


Platforms: *nix

MIME::Head is a MIME message header (a subclass of Mail::Header). SYNOPSIS Before reading further, you should see MIME::Tools to make sure that you understand where this module fits into the grand scheme of things. Go on, do it now. Ill wait. Ready? Ok... Construction ### Create a new,...


Platforms: *nix