Overlaps

ProDy is a Python package designed for protein structural dynamics analysis. ProDy is developed by Ahmet Bakan and licensed under the GPLv3. New features and functions are constantly being added to ProDy. The following are the main features that are present and working fine: Protein structure...

bedtools: a flexible suite of utilities for comparing genomic features. The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM....

Build Cannons, Generators and Barracks on the big station. Control and level up your smaller guardian ship flying at the front. Shmup and CityBuilding gameplay in one! Im sorry to say that this project is currently moving very slow, as I ponder the boring but imminent re-write I feel that the...


Platforms: *nix

cols=Easily create slick Flash presentations for business, sales or educational uses. Simple drag and drop interface means no technical expertise is required. Publish to the ubiquitous Flash format for maximum exposure. Powerbullet is aimed at non-technical users. If you are familiar with...


Platforms: Windows

Text::Scraper contains structured data from (un)structured text. SYNOPSIS use Text::Scraper; use LWP::Simple; use Data::Dumper; # # 1. Get our template and source text # my $tmpl = Text::Scraper->slurp(*DATA); my $src = get(http://search.cpan.org/recent) || die $!; # # 2. Extract...


Platforms: *nix

QDBM is a library of routines for managing a database. The QDBM database is a simple data file containing records, each is a pair of a key and a value. Every key and value is serial bytes with variable length. Both binary data and character string can be used as a key and a value. There is...


Platforms: *nix

Glib are Perl wrappers for the GLib utility and Object libraries. SYNOPSIS use Glib; ABSTRACT This module provides perl access to GLib and GLibs GObject libraries. GLib is a portability and utility library; GObject provides a generic type system with inheritance and a powerful signal...


Platforms: *nix

Devel::TraceLoad is a Perl module to trace loadings of Perl Programs. # with perldb perl -d:TraceLoad script.pl # without perldb perl -MDevel::TraceLoad script.pl # without perldb and with options perl -MDevel::TraceLoad=after,path script.pl # with perldb and options perl -d:TraceLoad...


Platforms: *nix

iCal::Parser::SAX is a Perl module to generate SAX events from an iCalendar. SYNOPSIS use iCal::Parser::SAX; my $parser=iCal::Parser::SAX->new(Handler=>SAXHandler,%args); $parser->parse_uri($file); $parser->parse_uris(@files); This module uses iCal::Parser to generates SAX events for the...


Platforms: *nix

ClassicDraw XT makes Quark's non-Mac OS X native applications usable with the Classic environment by fixing a number of annoying redraw bugs in XPress. The two fixed bugs include:The first version of ClassicDraw XT fixed a problem with XPress 3.3x and XPress 4.x which caused the document not to...


Platforms: Mac

A cross-platform plug-in that reverses continuous audio in real-time. Backwards Machine includes three effects: - Reverse Playback: Reverses and overlaps snippets of the incoming audio, to produce an ongoing backwards effect. - Forward Backwards: Smoothly cross-fades between forward and...


Platforms: Mac

The Digitas - freeware 32 bit binary, hex and decimal calculator. The Digitas handles the main arithmetic and logical operations - Exponentiation ^ Multiplication * Floating-point Division / (for decimal only) Integer Division Divides 2 integer numbers The result is truncated to an integer value....


Platforms: Windows

Simulates a city grid of streets, intersections and traffic signals. It supports 8 phases with overlaps, right and left hand drive, turnouts, permitted left and right on red, density and semi-actuation and help screens for every panel.


Platforms: Windows, Mac, Linux

XOOPS is an Open Source Web Application Platform, empowering webmasters to create dynamic and content rich websites with ease. It is highly compatible with XOOPS, allowing users to implement and enjoy their favourite XOOPS modules (have to be at least 2.0.7 compliant), while using the new and...


Platforms: Windows, *nix, PHP, BSD Solaris

HARMASYLLABLESEG - Segments a signal stored in a WAV file into individual syllables. Also graphs the spectrogram and signal with syllables highlighted in red to show what parts of the signal contain syllables. INPUT: - FILENAME: The path to a signal stored in WAV format. The following arguments...


Platforms: Matlab

cThe Standard for the Exchange of Earthquake Data (SEED) is an international standard format for the exchange of digital seismological data. SEED was designed for use by the earthquake research community, primarily for the exchange between institutions of unprocessed earth motion data. It is a...


Platforms: Matlab

plot_feasible(A, b, c, lower_b, upper_b, varargin)Plots the feasible region of the 2D linear program maximize f = c'*x subject to A x


Platforms: Matlab

Tokyo Cabinet is a library of routines for managing a database. It is the successor of QDBM. It runs very fast. For example, the time required to store 1 million records is 1.5 seconds for a hash database and 2.2 seconds for a B tree database. As for database of hash table, each key must be...


Platforms: Mac