Optimal Optimus

Global optimal sequence alignment using the Needleman-Wunsch algorithm. Aligns DNA, RNA, protein sequence and more! See our sister project local alignment using Smith-Waterman: http://sourceforge.net/projects/smithwaterman/

PopED (Population Experimental Design) is a software tool for computing optimal experimental designs. The software has been developed with an emphasis on drug trials based on population models (non-linear mixed effects models).

RefineHMM refines an original hidden Markov model (HMM) to find an optimal fit against the evolutionary group that the HMM models, and it does this using through iterative database searches and incremental subsequent adaptation of the seed set.


Platforms: Windows, Mac, Linux

The software implements a fast optimal co-folding of pairs of RNA sequences. The algorithm is described in details in the paper 'A faster algorithm for RNA co-folding' by Ziv-Ukelson, Gat-Viks, Wexler, and Shamir.


Platforms: Windows, Mac, Linux

When the Wi-Fi Scanner begins to run, you will immediately see all wireless networks located nearby and its signal level. You can work out the optimal position for their access point at home, so that the signal is accessible throughout their home.


Platforms: Windows

The Microsoft Best Practices Analyzer is an general-purpose engine that allows for a user to analyze settings in their systems to quickly identify problematic or sub-optimal configurations. The Best Practices Analyzer (BPA) uses a plug-in architecture that allows users to easily install and...


Platforms: Windows, ASP.NET,

It finds a (near) optimal solution to a variation of the M-TSP (that has a variable number of salesmen) by setting up a GA to search for the shortest route (least distance needed for the salesmen to travel to each city exactly once and return to their starting locations). Each salesman travels to...


Platforms: Windows, Mac, *nix, Matlab, BSD Solaris

Finds a (near) optimal solution to a variation of the "open" M-TSP by setting up a GA to search for the shortest route (least distance needed for each salesman to travel from the start location to unique individual cities without returning to the starting location).Each salesman starts at the...


Platforms: Windows, Mac, *nix, Matlab, BSD Solaris

The script finds a (near) optimal solution to a variation of the "open" M-TSP by setting up a GA to search for the shortest route (least distance needed for each salesman to travel from the start location to unique individual cities and finally to the end location).Each salesman starts at the...


Platforms: Windows, Mac, *nix, Matlab, BSD Solaris

Finds a (near) optimal solution to a variation of the M-TSP by setting up a GA to search for the shortest route (least distance needed for each salesman to travel from the start location to individual cities and back to the original starting place).Each salesman starts at the first point, and...


Platforms: Windows, Mac, *nix, Matlab, BSD Solaris

It is based on theories and techniques like optimal control, observability, controllability and Lyapunov stability. Requirements: - MATLAB 7.5 or higher - MATLAB's Control System Toolbox


Platforms: Windows, Mac, *nix, Matlab, BSD Solaris

This allows having the blog name tacked on to the end of the page title instead of having it appear first.Having your page information appear before your blog name in the title is advantageous because it provides more meaningful search engine results and browser bookmark names. The text that...


Platforms: Windows, Mac, *nix, PHP, BSD Solaris

This project is more optimal and advanced version of project http://www.mathworks.com/matlabcentral/fil...rogram-of-musicSound steganography ProjectProgram converting pictures into musicComponents:* image_to_wav.m - main script with program, if you want to makechanges with parameters of...


Platforms: Matlab

The performance of the level set segmentation is subject to appropriate initialization and optimal configuration of controlling parameters, which require substantial manual intervention. A new fuzzy level set algorithm is proposed in this paper to facilitate medical image segmentation. It is able...


Platforms: Matlab

This program places dates on time axis as DATETICK and works with ZOOM and PAN as DATETICKZOOM by Christophe Lauwerys. But, it also shows the full date after zooming or panning by using the ticks and time-axis label. So, if you zoom in down to second, you won't loose "when" you are.The input...


Platforms: Matlab

SVMs are a bit tricky. In this case, we show a linear SVM and illustrate its behaviour on some 2D data. This should be great for getting to grips with maximising geometric margins, support vectors, and the optimisation involved in computing an optimal separating hyperplane.Data can be generated...


Platforms: Matlab

The files in this folder solve the optimization case studies described in the paper "VaR vs CVaR in Risk Management and Optimization" by Sarykalin,S., Serraino,G., and Uryasev,S., in Tutorials in Operations Research, INFORMS 2008 (download www.ise.ufl.edu/uryasev/VaR_vs_CVaR_INFORMS.pdf...


Platforms: Matlab

MatPlanWDM is a network planning tool for wavelength-routing WDM networks. The input parameters to the planning problem are the network physical topology, the traffic matrix, and technological constraints like the number of transmitters, receivers, optical converters and wavelengths available. It...


Platforms: Matlab

In one type of gene expression analysis, fluorescently tagged messenger RNA from different cells are hybridized to a microscopic array of thousands of complimentary DNA spots that correspond to different genes. Illuminated spots emit different color light, indicating which genes are expressed...


Platforms: Matlab

This interactive MATLAB script (sep_ltot.m) can be used to determine the characteristics of continuous, low-thrust orbital transfer between two nonplanar circular orbits using solar-electric propulsion (SEP). The numerical method used in this script is described in Chapter 14 of the book Orbital...


Platforms: Matlab