Ontology Philosophy
Module::Install::Philosophy Perl module contains the concepts behind Module::Install. SYNOPSIS This document describes the personal philosophy behind the creation of CPAN::MakeMaker (the predecessor of Module::Install). The views expressed here belong to Brian Ingerson; if they are not of...
Platforms: *nix
License: Freeware | Size: 81.92 KB | Download (100): Module::Install::Philosophy Download |
Bio::Ontology::Relationship is a relationship for an ontology. SYNOPSIS $rel = Bio::Ontology::Relationship->new( -identifier => "16847", -subject_term => $subj, -object_term => $obj, -predicate_term => $pred ); This is a basic implementation of Bio::Ontology::RelationshipI. The...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (109): Bio::Ontology::Relationship Download |
Bio::Ontology::GOterm is a representation of GO terms. SYNOPSIS $term = Bio::Ontology::GOterm->new ( -go_id => "GO:0016847", -name => "1-aminocyclopropane-1-carboxylate synthase", -definition => "Catalysis of ...", -is_obsolete => 0, -comment => "" ); $term->add_definition_references(...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (95): Bio::Ontology::GOterm Download |
Bio::Ontology::Ontology is a standard implementation of an Ontology. SYNOPSIS use Bio::Ontology::Ontology; # create ontology object my $ont = Bio::Ontology::Ontology->new(-name => "OBF"); # add terms, relationships ... my $bp = Bio::Ontology::Term->new(-name => "Bioperl"); my $obf =...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (92): Bio::Ontology::Ontology Download |
OntologyEngineI is a Perl interface a minimal Ontology implementation should satisfy. This describes the minimal interface an ontology query engine should provide. It intentionally doesnt make explicit references to the ontology being a DAG, nor does it mandate that the ontology be a...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (90): Bio::Ontology::OntologyEngineI Download |
It is an application focused on the ontology modeling ot the experimental factors in ArrayExpress.The application is used also in the constructing of mappings to multiple existing domain specific ontologies, such as Disease Ontology.
Platforms: Windows, Mac, *nix, Perl, BSD Solaris
License: Freeware | Download (57): Experimental Factor Ontology Download |
ORE (Ontology Rule Editor) is a platform-independent application to manage the use of inference rules defined on a model represented by an ontology. ORE offers a easy, well-guided and intiutive GUI to define and test these inference rules.
Platforms: *nix
License: Freeware | Size: 28.43 MB | Download (32): ORE (Ontology Rule Editor) Download |
The home of the Gene Ontology project on SourceForge, including ontology requests, software downloads, bug trackers, and much, much more.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 44.5 MB | Download (47): Gene Ontology Download |
ONTODerm is a specialty specific ontology for dermatology to integrate dermatology with medical software systems.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 29.23 KB | Download (57): ONTODerm - Ontology for Dermatology Download |
An open source common API tasks to query existing ontology resources in local files (OWL and OBO) as well as public repositories (Bioportal, OLS) using a standardised, uniform interface.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 23.95 MB | Download (43): Ontology Common API Tasks (OntoCAT) Download |
ROO is an (OWL) ontology construction tool based on Protégé 4. ROO makes the ontology building process easier as it provides guidance about the steps involved and it allows to enter knowledge using an easy to learn controlled natural language.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 32.61 MB | Download (52): ROO Rabbit to OWL Ontology construction Download |
OpenSPM project consists of two parts: a general philosophy on and about most aspects of exploiting parallelism using general purpose compute resources, and a comprehensive, customizable software package based on the aforementioned philosophy.. Main web-page of MBA Sciences, Inc.
Platforms: *nix
License: Freeware | Size: 33 MB | Download (95): OpenSPM Download |
Phenex is an application for annotating character matrix files with ontology terms. Character states can be annotated using the Entity-Quality syntax for ontologically describing phenotypes. In addition, taxon entries can be annotated with identifiers from a taxonomy ontology. Phenex saves...
Platforms: Windows
License: Freeware | Size: 28.4 MB | Download (696): Phenex Download |
A philosophical version of snake that is bound to bring a smile to your face. Play on 5 different levels, helping Wittgenstein to eat apples in order to engorge himself. Control the snake using the Up, Down, Left and Right keys. Make sure that you dont overlap the snake or you will have to...
Platforms: Windows
License: Freeware | Size: 422 KB | Download (56): Philosophy Snake Download |
Alignment API is a development tool that allows various ontology matchers to share the same format and interface for accessing matching results. Using ontologies is the privileged way to achieve interoperability among heterogeneous systems within the Semantic web. However, as the ontologies...
Platforms: *nix
License: Freeware | Size: 32.2 MB | Download (43): Alignment API Download |
There are so many different media players out there, why bother to try yet another? That's a no-brainer; none of them fully satisfy your needs. We believe you think like we do, that a really good media player should not only be able to play all the media files in your library, but also be simple...
Platforms: Windows
License: Freeware | Size: 3.26 MB | Download (865): Ace Media Player Download |
swpkg project is a collection of small tools based on a fairly simple philosophy and designed to simplify the management of third party software packages including their inter-dependencies. These tools cover every aspect of building, installing and maintaining software packages and include the...
Platforms: *nix
License: Freeware | Size: 83.97 KB | Download (93): swpkg Download |
GO::Model::Term is a term or concept in an ontology. SYNOPSIS # From a file use GO::Parser; my $parser = new GO::Parser({handler=>obj}); # create parser object $parser->parse("gene_ontology.obo"); # parse file -> objects my $graph = $parser->handler->graph; # get L object my $term =...
Platforms: *nix
License: Freeware | Size: 593.92 KB | Download (97): GO::Model::Term Download |
Prot+eg+e is an ontology editor and a knowledge-base editor.Prot+eg+e is also an open-source, Java tool that provides an extensible architecture for the creation of customized knowledge-based applications.
Platforms: Mac
License: Freeware | Size: 23.4 MB | Download (314): Protege Download |
FluentEditor for OWL is comprehensive tool for editing and manipulating complex ontologies using Controlled Natural Language. Fluent editor provides alternative to XML-based OWL editors that is better suitable for human users.
It's main feature is using Controlled English as a knowledge...
Platforms: Windows
License: Freeware | Size: 11.9 MB | Download (49): Fluent Editor for OWL Download |