Obj

Bio::PrimarySeqI is a Perl Interface definition for a Bio::PrimarySeq. SYNOPSIS # Bio::PrimarySeqI is the interface class for sequences. # If you are a newcomer to bioperl, you should # start with Bio::Seq documentation. This # documentation is mainly for developers using # Bioperl. #...

GO::Model::Term is a term or concept in an ontology. SYNOPSIS # From a file use GO::Parser; my $parser = new GO::Parser({handler=>obj}); # create parser object $parser->parse("gene_ontology.obo"); # parse file -> objects my $graph = $parser->handler->graph; # get L object my $term =...

Scalar::Util is a selection of general-utility scalar subroutines. SYNOPSIS use Scalar::Util qw(blessed dualvar isweak readonly refaddr reftype tainted weaken isvstring looks_like_number set_prototype); Scalar::Util contains a selection of subroutines that people have expressed would be...


Platforms: *nix

CGI::AppBuilder::Frame is a configuration initializer. SYNOPSIS use CGI::AppBuilder::Frame; my $ab = CGI::AppBuilder::Frame- >new( ifn, my_init.cfg, opt, vhS:a:); my ($q, $ar, $ar_log) = $ab- >start_app($0, %ARGV); print $ab- >disp_form($q, $ar); This class provides methods for reading...


Platforms: *nix

Bio::Biblio::Patent is a representation of a patent. SYNOPSIS $obj = new Bio::Biblio::Patent (-doc_number => 1-2-3-4-5); #--- OR --- $obj = new Bio::Biblio::Patent; $obj->doc_number (1-2-3-4-5); A storage object for a patent. See its place in the class hierarchy in...


Platforms: *nix

Class::Declare is a Perl module created to declare classes with public, private and protected attributes and methods. SYNOPSIS package My::Class; use strict; use warnings; use base qw( Class::Declare ); __PACKAGE__->declare( public => { public_attr => 42 } , private => { private_attr...


Platforms: *nix

File::Wildcard is a Perl module for enhanced glob processing. SYNOPSIS use File::Wildcard; my $foo = File::Wildcard->new(path => "/home/me///core"); while (my $file = $foo->next) { unlink $file; } When looking at how various operating systems do filename wildcard expansion (globbing),...


Platforms: *nix

Sys::AlarmCall is a package to handle the logic in timing out calls with alarm() and an ALRM handler, allowing nested calls as well. SYNOPSIS use Sys::AlarmCall; $result = alarm_call($timeout1,$func1,@args1); @result = alarm_call($timeout2,$func2,@args2); Sys::AlarmCall provides a...


Platforms: *nix

Business::PayPal::SDK is an interface to paypals SDKs. SYNOPSIS use Business::PayPal::SDK; my $pp = new Business::PayPal::SDK( { paypal_apiid => "sdk-seller_api1.sdk.com", paypal_apipw => "12345678", paypal_cert => "paypal_java_sdk/samples/Cert/sdk-seller.p12", paypal_certpw =>...


Platforms: *nix

Geo::ShapeFile is a Perl extension for handling ESRI GIS Shapefiles. SYNOPSIS use Geo::ShapeFile; my $shapefile = new Geo::ShapeFile("roads"); for(1 .. $shapefile->shapes()) { my $shape = $shapefile->get_shp_record($_); # see Geo::ShapeFile::Shape docs for what to do with $shape my...


Platforms: *nix

PIX::Walker is a Perl module to process Cisco PIX configs and walk access-lists. SYNOPSIS PIX::Walker is an object that allows you to process PIX firewall configs and walk an access-list for matches. PIX OS versions 6 and 7 are supported. ** This module is still in very early development **...


Platforms: *nix

YAPE::Regex::Element contains sub-classes for YAPE::Regex elements. SYNOPSIS use YAPE::Regex MyExt::Mod; # this sets up inheritence in MyExt::Mod # see YAPE::Regex documentation YAPE MODULES The YAPE hierarchy of modules is an attempt at a unified means of parsing and extracting...


Platforms: *nix

Object::InsideOut is a comprehensive inside-out object support module. SYNOPSIS package My::Class; { use Object::InsideOut; # Numeric field # With combined get+set accessor my @data :Field :Type(numeric) :Accessor(data); # Takes INPUT (or input, etc.) as a mandatory parameter to...


Platforms: *nix

Method::Declarative is a Perl module to create methods with declarative syntax. SYNOPSIS use Method::Declarative ( --defaults => { precheck => [ [ qw(precheck1 arg1 arg2) ], # ... ], postcheck => [ [ qw(postcheck1 arg3 arg4) ], # ... ], init => [ [ initcheck1 ], # ... ],...


Platforms: *nix

Basset::Object::Persistent is a subclass of Basset::Object that allows objects to be easily stored into a relational database. Presently only supports MySQL, but that may change in the future. SYNOPSIS (no synopsis, this is an abstract super class that should never be instantiated directly,...


Platforms: *nix

Rose::Object::MakeMethods::Generic is a Perl module that can create simple object methods. SYNOPSIS package MyObject; use Rose::Object::MakeMethods::Generic ( scalar => [ power, error, ], scalar --get_set_init => name, boolean --get_set_init => is_tall, boolean => [ is_red,...


Platforms: *nix

Rose::DB::Object::Helpers is a mix-in class containing convenience methods for Rose::DB::Object. SYNOPSIS package MyDBObject; use Rose::DB::Object; our @ISA = qw(Rose::DB::Object); use Rose::DB::Object::Helpers clone, { load_or_insert => find_or_create }; ... $obj =...


Platforms: *nix

Event::RPC is a event based transparent Client/Server RPC framework. SYNOPSIS #-- Server Code use Event::RPC::Server; use My::TestModule; my $server = Event::RPC::Server->new ( port => 5555, classes => { "My::TestModule" => { ... } }, ); $server->start;...


Platforms: *nix

Bio::LiveSeq::Translation is a translation class for LiveSeq. This stores informations about aminoacids translations of transcripts. The implementation is that a Translation object is the translation of a Transcript object, with different possibilities of manipulation, different coordinate...


Platforms: *nix

XML::Generator::PerlData is a Perl extension for generating SAX2 events from nested Perl data structures. SYNOPSIS use XML::Generator::PerlData; use SomeSAX2HandlerOrFilter; ## Simple style ## # get a deeply nested Perl data structure... my $hash_ref =...


Platforms: *nix