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Released: June 12, 2012  |  Added: June 12, 2012 | Visits: 199

VCAKE VCAKE is a genetic sequence assembler capable of assembling millions of small nucleotide reads even in the presence of sequencing error. This software is currently geared towards de novo assembly of Illumina's Solexa Sequencing data.

Platforms: Windows, Mac, Linux

License: Freeware Size: 101.03 KB Download (35): VCAKE Download

Added: April 22, 2013 | Visits: 305

dbSNP tool dbSNPtool starts a GUI to return polymorphism data from Calling dbsnptool start the GUI, SNP % records are returned based on keyword. Each result is presented in a % listbox, clicking on the entry loads the sequence into the sequence %viewer. Information is presenting...

Platforms: Matlab

License: Freeware Size: 40.96 KB Download (31): dbSNP tool Download

Added: August 07, 2013 | Visits: 299

fpat: a fuzzy pattern detector Schwarz, Shoelson & Amphlett, Retailers Of Fine MATLAB Cloth Since 1987, proudly announce another piece of visionary software: FPAT - A Fuzzy Pattern DetectorDid you ever listen to a toddler talk?Easily your brain finds words amongst the noisy babble...Did you ever think of faulty DNA?Easily...

Platforms: Matlab

License: Freeware Size: 10 KB Download (31): fpat: a fuzzy pattern detector Download

Added: December 02, 2013 | Visits: 882

MrAIC is a Perl script for calculating AIC, AICc, BIC, and Akaike weights (for a review, see Burnham and Anderson, 2002) for nucleotide substitution models. Likelihood scores under different models are estimated using PHYML (Guindon and Gascuel, 2003). Input is DNA data in PHYML format (see...

Platforms: Mac

License: Freeware Size: 10.24 KB Download (31): MrAIC Download

Added: December 02, 2013 | Visits: 576

fast5 For Linux Fast5 is a probabilistic file format for the storage of nucleotide and protein sequences based on hdf5.

Platforms: *nix

License: Freeware Size: 40.96 KB Download (30): fast5 For Linux Download

Added: July 24, 2013 | Visits: 268

FAIF The C++ library for bioinformatics and artificial intelligence. Basic abstractions (like attribute, domain, state, etc.), DNA primitives (Nucleotide, Chain, EnergyNucleo, SecStruct, FoldedChain, FoldedPair, Codon, CodonAminoTable, Nussinov algorithm), population genetics primitives (Allele,...

Platforms: Mac

License: Freeware Size: 112.64 KB Download (30): FAIF Download

Added: November 13, 2013 | Visits: 379

FFP-Feature Frequency Profile Phylogeny FFP (Feature frequency profile) is an alignment free comparison tool for phylogenetic analysis and text comparison. It can be applied to nucleotide sequences, complete genomes, proteomes and even used for text comparison. Features . Comparison of Genomes, protein and nucleic acid sequences...

Platforms: *nix

License: Freeware Size: 215.04 KB Download (29): FFP-Feature Frequency Profile Phylogeny Download

Added: November 19, 2013 | Visits: 388

SAM Tools SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. SAM aims to be a format that: * Is flexible enough to store all the alignment information generated by various alignment programs; * Is simple enough to be easily generated by alignment...

Platforms: Mac

License: Freeware Size: 368.64 KB Download (28): SAM Tools Download

Added: November 03, 2013 | Visits: 341

Consensus and Combination of Two Arrays This script takes genotypes from two different arrays and creates a consensus spreadsheet, and two optional spreadsheets. In order to run this script two spreadsheets of mapped genotype data are required. The spreadsheets may also contain non-marker mapped columns as they will be skipped when...

Platforms: Mac

License: Freeware Size: 10.24 KB Download (28): Consensus and Combination of Two Arrays Download

Added: October 04, 2013 | Visits: 452

pknotsRG pknotsRG is a tool for folding RNA secondary structures, including the class of simple recursive pseudoknots. The program runs in O(n^4) time and O(n^2) space, therefore its application here on the BiBiserv is limited to sequences of length up to 800 bases. The energy parameters for structures...

Platforms: Mac

License: Freeware Size: 460.8 KB Download (28): pknotsRG Download

Added: July 03, 2013 | Visits: 296

Avenzoar Digital Pathology Tool Avenzoar is a one-year exploration of renal cell carcinoma morphology and its related single nucleotide polymorphisms (SNPa) as a method of automating diagnosis of cancer by using a computer-aided decision tree controlled by analytical statistics. Features Detects and comes to a...

Platforms: *nix

License: Freeware Size: 54.77 MB Download (24): Avenzoar Digital Pathology Tool Download

Released: July 08, 2014  |  Added: July 08, 2014 | Visits: 231

Dna Sequence Converter In molecular biology, complementarity is a property shared between two nucleic acid sequences, such that when they are aligned antiparallel to each other, the nucleotide bases at each position will be complementary. Two bases are complementary if they form Watson-Crick base pairs. REVERSE In...

Platforms: Windows Phone

License: Freeware Size: 1024 KB Download (19): Dna Sequence Converter Download

Released: May 27, 2014  |  Added: May 27, 2014 | Visits: 209

Random Number & Text Generator What does this app do? This app creates a random string of characters (that you choose). You can choose how many characters you want the string to be. How to use this app: 1. Decide which characters you would like to appear in your randomly generated. 2. Enter them into the Allowed characters...

Platforms: iOS

License: Freeware Size: 102.4 KB Download (15): Random Number & Text Generator Download

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