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Nucleotide freeware
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Nucleotide

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Released: November 25, 2012  |  Added: November 25, 2012 | Visits: 537

GENtle for Mac OS X GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more. It is free software under GPLv2+. Requested Features: - Import of Vector NTI...



Platforms: Mac

License: Freeware Size: 3.7 MB Download (340): GENtle for Mac OS X Download

Added: July 07, 2013 | Visits: 836

msatcommander msatcommander is a python program written to locate microsatellite (SSR, VNTR, &c) repeats within fasta-formatted sequence or consensus files. msatcommander will search for all di-, tri-, tetra-, penta-, and hexa-nucleotide repeats (with options to search for fewer repeat types and combinations...





Platforms: Mac

License: Freeware Size: 11.7 MB Download (267): msatcommander Download

Released: July 12, 2012  |  Added: July 12, 2012 | Visits: 546

GENtle for Linux GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more. It is free software under GPLv2+. Requested Features: - Import of Vector NTI...


Platforms: Linux

License: Freeware Size: 1.7 MB Download (258): GENtle for Linux Download

Released: September 02, 2012  |  Added: September 02, 2012 | Visits: 599

GENtle for Windows GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more. It is free software under GPLv2+. Requested Features: - Import of Vector NTI...


Platforms: Windows

License: Freeware Size: 2.7 MB Download (252): GENtle for Windows Download

Released: November 24, 2012  |  Added: November 24, 2012 | Visits: 487

Geneious Basic x64 Geneious is a useful, unique and easy-to-use software system which has been designed to greatly speed up and simplify the research in molecular biology and biochemistry. Geneious is a cross-platform research engine for the retrieval, organization and analysis of biomolecular data that allows...


Platforms: Windows

License: Freeware Size: 39.6 MB Download (241): Geneious Basic x64 Download

Released: October 02, 2012  |  Added: October 02, 2012 | Visits: 476

Geneious Basic Geneious is a useful, unique and easy-to-use software system which has been designed to greatly speed up and simplify the research in molecular biology and biochemistry. Geneious is a cross-platform research engine for the retrieval, organization and analysis of biomolecular data that allows...


Platforms: Windows

License: Freeware Size: 39.6 MB Download (206): Geneious Basic Download

Released: October 16, 2012  |  Added: October 16, 2012 | Visits: 401

Recodon Recodon is a population genetic simulator that generates samples of nucleotide and codon sequences from populations with recombination, migration and growth. The last version includes new codon models (M1, M7 y M8) and new output options.


Platforms: Windows

License: Freeware Size: 1.2 MB Download (204): Recodon Download

Released: September 04, 2012  |  Added: September 04, 2012 | Visits: 404

ASaturA The usual way to demonstrate saturation in nucleotide sequences is to plot the fraction of differences between sequences against the evolutionary distance separating them. When the number of observed differences, for example for the fraction of third codon positions, no longer increases with...


Platforms: Windows

License: Freeware Download (190): ASaturA Download

Released: June 24, 2012  |  Added: June 24, 2012 | Visits: 428

ncRNA Mapper ncRNA Mapper is a computer program that gives more insight in the localization of sequencing fragments. Given that sequencing of RNA gives reads at fixed base-positions, ncRNA Mapper analyzes the alignments (generated by Short Sequence Location Mapper; SSLM) by: visualizing them, retrieving the...


Platforms: Windows

License: Freeware Download (173): ncRNA Mapper Download

Released: June 15, 2012  |  Added: June 15, 2012 | Visits: 445

inGAP inGAP is a handy, easy to use application specially designed to offer you an integrative next-generation genome analysis pipeline, which employed a Bayesian principle to detect single nucleotide polymorphisms (SNPs), small insertion/deletions (indels). inGAP has been applied to a number of genome...


Platforms: Windows

License: Freeware Download (167): inGAP Download

Added: October 17, 2010 | Visits: 1.090

Bio::Tools::CodonTable Bio::Tools::CodonTable is a bioperl codon table object. SYNOPSIS # This is a read-only class for all known codon tables. The IDs are # the ones used by nucleotide sequence databases. All common IUPAC # ambiguity codes for DNA, RNA and animo acids are recognized. # to use use...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (108): Bio::Tools::CodonTable Download

Added: January 25, 2010 | Visits: 810

Nucleotide BLAST Widget Nucleotide BLAST Widget provides a quick access to the Nucleotide Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.


Platforms: Mac

License: Freeware Download (106): Nucleotide BLAST Widget Download

Added: January 25, 2010 | Visits: 779

CLC Free Workbench CLC Free Workbench is the foundation for all bioinformatics workbenches from CLC bio. This software package is a community edition, available for download free of charge.The workbench creates a software environment enabling users to make basic bioinformatics analyses and smooth data management,...


Platforms: Mac

License: Freeware Download (87): CLC Free Workbench Download

Added: September 22, 2010 | Visits: 794

ToBiX ToBiX is a Morphix-based Linux live CD containing a range of specialist applications for bioinformatics. With this distrubution you just boot from the CD and you have a fully functional LINUX OS distribution with open source applications. Besides using some RAM, ToBiX doesnt touch the host...


Platforms: *nix

License: Freeware Size: 457.2 MB Download (83): ToBiX Download

Added: November 11, 2013 | Visits: 663

SIMMAP SIMMAP 1.5 is a post tree analysis GUI software package for stochastically mapping mutations on phylogenies. This approach does not rely on parsimony and, therefore, does not suffer some of the serious drawbacks of that method. It uses the "indirect" mutational mapping approach as first developed...


Platforms: Mac

License: Freeware Size: 1.69 MB Download (45): SIMMAP Download

Released: November 21, 2012  |  Added: November 21, 2012 | Visits: 344

PhyloCoco for Mac OS A minimalistic tool for molecular phylogenetics able to recover phylogenies from nucleotide sequences. PhyloCoco uses the likelihood or the minimum evolution criterion, and automatically selects the best substitution model of DNA evolution for the dataset analyzed.PhyloCoco key-features are: -...


Platforms: Mac

License: Freeware Size: 4.6 MB Download (40): PhyloCoco for Mac OS Download

Released: September 10, 2012  |  Added: September 10, 2012 | Visits: 439

CLC RNA Workbench for Mac OS A bioinformatics program for advanced RNA sequence analysis. All analyses are fully integrated in one single, user-friendly, and intuitive software application. Some analyses are: - Secondary structure prediction - Graphical view and editing of secondary structure - Tabular view of structures...


Platforms: Mac

License: Freeware Size: 35 MB Download (37): CLC RNA Workbench for Mac OS Download

Released: August 13, 2012  |  Added: August 13, 2012 | Visits: 511

CLC Sequence Viewer 64-bit CLC Sequence Viewer creates a software environment enabling users to make a large number of bioinformatics analyses, combined with smooth data management, and excellent graphical viewing and output options. Bioinformatics features in CLC Sequence Viewer Multiple alignment of DNA, RNA, and...


Platforms: Windows

License: Freeware Size: 38 MB Download (37): CLC Sequence Viewer 64-bit Download

Released: June 23, 2012  |  Added: June 23, 2012 | Visits: 358

SeqCorator SeqCorator brings advanced graphics to the world of sequence analysis and illustration, creating an environment akin to a combination of Word and PowerPoint that understands sequence data. The integration of graphic drawing and styled text editing enables innovative ways for designing...


Platforms: Windows, Mac, Other, Unix, Linux, Java, Linux Console, Linux Gnome, Linux GPL, Linux Open Source, MS-DOS

License: Freeware Size: 26.56 MB Download (37): SeqCorator Download

Released: June 24, 2012  |  Added: June 24, 2012 | Visits: 276

BARNACLE BARNACLE is a Python library for RNA 3D structure prediction. It can be used for probabilistic sampling of RNA structures that are compatible with a given nucleotide sequence and that are RNA like on a local length scale.


Platforms: Windows, Mac, BSD, Linux

License: Freeware Size: 48.59 KB Download (37): BARNACLE Download

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