Nexus Magazine
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Bio::NEXUS::Block is a Perl module that provides useful functions for blocks in NEXUS file (parent class). SYNOPSIS This module is the super class of all NEXUS block classes. It is not used specifically from a program; in other words, you dont create a new Bio::NEXUS::Block object. Other...
Platforms: *nix
License: Freeware | Size: 153.6 KB | Download (97): Bio::NEXUS::Block Download |
Bio::NEXUS::Node is a Perl module that provides functions for manipulating nodes in trees. SYNOPSIS new Bio::NEXUS::Node; METHODS new Title : new Usage : $node = new Bio::NEXUS::Node(); Function: Creates a new Bio::NEXUS::Node object Returns : Bio::NEXUS::Node object Args : none...
Platforms: *nix
License: Freeware | Size: 153.6 KB | Download (98): Bio::NEXUS::Node Download |
Bio::NEXUS::TaxaBlock is a Perl module that represents TAXA block of a NEXUS file. SYNOPSIS if ( $type =~ /taxa/i ) { $block_object = new Bio::NEXUS::TaxaBlock($type, $block, $verbose); } If a NEXUS block is a taxa block, this module parses the block and stores the taxonomic data....
Platforms: *nix
License: Freeware | Size: 153.6 KB | Download (93): Bio::NEXUS::TaxaBlock Download |
Bio::NEXUS::TreesBlock is a Perl module that represents TREES block of a NEXUS file. SYNOPSIS if ( $type =~ /trees/i ) { $block_object = new Bio::NEXUS::TreesBlock( $block_type, $block, $verbose ); } If a NEXUS block is a Trees Block, this module parses the block and stores the tree data....
Platforms: *nix
License: Freeware | Size: 153.6 KB | Download (91): Bio::NEXUS::TreesBlock Download |
Bio::NEXUS::WeightSet is a Perl module that represents column weights in alignment ( for each character). SYNOPSIS new Bio::NEXUS::WeightSet($name, @weights, $iswt); A module representing column weights in alignment (for each character) METHODS new Title : new Usage : $node = new...
Platforms: *nix
License: Freeware | Size: 153.6 KB | Download (90): Bio::NEXUS::WeightSet Download |
Bio::NEXUS::HistoryBlock is a Perl module that represents a HISTORY block of a NEXUS file. SYNOPSIS $block_object = new Bio::NEXUS::HistoryBlock(history, $block, $verbose); This is a class representing a history block in NEXUS file METHODS new Title : new Usage : block_object = new...
Platforms: *nix
License: Freeware | Size: 153.6 KB | Download (99): Bio::NEXUS::HistoryBlock Download |
Bio::NEXUS::CodonsBlock is a Perl module that represents CODONS block in NEXUS file. METHODS new Title : new Usage : block_object = new Bio::NEXUS::CodonsBlock(); Function: Creates a new Bio::NEXUS::CodonsBlock object Returns : Bio::NEXUS::CodonsBlock object Args :.
Platforms: *nix
License: Freeware | Size: 153.6 KB | Download (133): Bio::NEXUS::CodonsBlock Download |
Bio::NEXUS::MatrixBlock is a Perl module that provides functions for handling blocks that have matrices. SYNOPSIS This module is the super class of Characters, Unaligned, and Distances block classes, and indirectly it is a super-class of Data and History blocks, which are both sub-classes of...
Platforms: *nix
License: Freeware | Size: 153.6 KB | Download (86): Bio::NEXUS::MatrixBlock Download |
Bio::NEXUS::DataBlock is a Perl module that represents the deprecated DATA Block in NEXUS file. SYNOPSIS $block_object = new Bio::NEXUS::DataBlock($type, $block, $verbose, $taxlabels_ref); The DataBlock class represents the deprecated Data Block in a NEXUS file. Data Blocks are still used...
Platforms: *nix
License: Freeware | Size: 153.6 KB | Download (105): Bio::NEXUS::DataBlock Download |
Bio::NEXUS::UnalignedBlock is a Perl module that represents an UNALIGNED block of a NEXUS file. SYNOPSIS if ( $type =~ /unaligned/i ) { $block_object = new Bio::NEXUS::UnalignedBlock($type, $block, $verbose); } This is a class representing an unaligned block in NEXUS file METHODS new...
Platforms: *nix
License: Freeware | Size: 153.6 KB | Download (91): Bio::NEXUS::UnalignedBlock Download |
Bio::NEXUS::SetsBlock is a Perl module that represents SETS block of a NEXUS file. SYNOPSIS $block_object = new Bio::NEXUS::SetsBlock($block_type, $block, $verbose); Parses Sets block of NEXUS file and stores Sets data. METHODS new Title : new Usage : $block_object = new...
Platforms: *nix
License: Freeware | Size: 153.6 KB | Download (88): Bio::NEXUS::SetsBlock Download |
Bio::NEXUS::Functions is a Perl module that provides private utility functions for the module. This package provides private functions that are not object-specific..
Platforms: *nix
License: Freeware | Size: 153.6 KB | Download (91): Bio::NEXUS::Functions Download |
Bio::NEXUS::NotesBlock is a Perl module that represents a NOTES block in a NEXUS file. Placeholding module for the Notes Block class..
Platforms: *nix
License: Freeware | Size: 153.6 KB | Download (90): Bio::NEXUS::NotesBlock Download |
Bio::NEXUS::DistancesBlock is a Perl module that represents DISTANCES block in NEXUS file. The DistancesBlock class represents a NEXUS Distances Block and provides methods for reading, writing, and accessing data within these blocks. Distances Blocks contain distance matrices, or a table of...
Platforms: *nix
License: Freeware | Size: 153.6 KB | Download (96): Bio::NEXUS::DistancesBlock Download |
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Platforms: Windows, Windows CE
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Platforms: Windows
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Platforms: Windows
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