Ncbi Sequence
Sequence Analysis project is a collage of coding projects which I have written over the past several years for various clients in my work as a bioinformatics consultant. These clients have graciously allowed me to release these works into the public domain as freeware for Macintosh OS X in...
Platforms: *nix
License: Freeware | Size: 2.3 MB | Download (122): Sequence Analysis Download |
UML::Sequence is a Perl module to render UML sequence diagrams, often by running the code. SYNOPSIS use UML::Sequence; my $tree = UML::Sequence->new(@methods, @outline, &parse_method); print $tree->build_xml_sequence(Title); To use this package, or see how to use it, see genericseq.pl...
Platforms: *nix
License: Freeware | Size: 122.88 KB | Download (159): UML::Sequence Download |
UML::Sequence::JavaSeq is a Perl module for use with genericseq.pl script, works on compiled Java programs. SYNOPSIS genericseq.pl UML::Sequence::JavaSeq Hello.methods Hello > Hello.xml seq2svg.pl Hello.xml > Hello.svg OR genericseq.pl UML::Sequence::JavaSeq Hello.methods Hello |...
Platforms: *nix
License: Freeware | Size: 122.88 KB | Download (92): UML::Sequence::JavaSeq Download |
Chart::Sequence is a sequence Perl class. SYNOPSIS use Chart::Sequence; my $s = Chart::Sequence->new( Nodes => [qw( A B C )], Messages => [ [ A => B => "Message 1" ], [ B => A => "Ack 1" ], [ B => C => "Message 2" ], ], ); # or # my $s = Chart::Sequence->new( SeqMLInput =>...
Platforms: *nix
License: Freeware | Size: 15.36 KB | Download (105): Chart::Sequence Download |
Short Sequence Location Mapper loads the sequences, then aligns them and finally graphs and tables can be generated for one or more datasets at the same time.
SSLM typically works with a BLAST data output file of short Solexa reads mapped to RNA subjects (for example pre-miRNA sequences).
The...
Platforms: Windows
License: Freeware | Download (471): Short Sequence Location Mapper Download |
Creates an Excel spreadsheet report about the video clips, audio clips and markers you've used in your edited sequence. The report includes sheets for: Clips, Sequence Markers, Clip Markers, Clip Filters, and Reels.
Sequence Clip Reporter takes the tedious work out of creating clip usage reports...
Platforms: Mac
License: Freeware | Size: 3.6 MB | Download (479): Sequence Clip Reporter for Mac OS Download |
The fastest way to remove duplicates from a sequence depends on some pretty subtle properties of the sequence elements, such as whether they're hashable, and whether they support full comparisons. This script defines the unique() function that tries three methods, from fastest to slowest,...
Platforms: Windows, Mac, *nix, Python, BSD Solaris
License: Freeware | Download (52): Remove duplicates from a sequence Download |
This script contains a function that given a sequence and a number n as parameters, returns the th permutation of the sequence (always as a list).
Platforms: Windows, Mac, *nix, Python, BSD Solaris
License: Freeware | Download (54): Getting th permutation of a sequence Download |
This script allows you to split up a sequence in same-size (if possible) parts.
Platforms: Windows, Mac, *nix, Python, BSD Solaris
License: Freeware | Download (51): Splitting up a sequence Download |
Getting min/max in a sequence script allows you to find the min/max value in a sequence as compared to a reference.
Platforms: Windows, Mac, *nix, Python, BSD Solaris
License: Freeware | Download (51): Getting min/max in a sequence Download |
This function provides farey sequence, F(n), for any integer n.There's probably a more elegant solution out there, but I couldn't find it. Note: it doesn't prepend (0,1) and append (1,1)...
Platforms: Windows, Mac, *nix, Python, BSD Solaris
License: Freeware | Download (52): Farey Sequence Download |
It will ask for input the bit stream then generate pseudorandom bit sequence, finally give output as direct sequence spread spectrum.....
Platforms: Matlab
License: Freeware | Size: 102.4 KB | Download (43): Direct Sequence Spread Spectrum(DS SS) Download |
Euler Angles To Quaternion Conversion for six basic sequence of rotations around X(Roll),Y(Pitch) and Z(Yaw) axis.Allowed Sequences: xyz, xzy, yxz, yzx, zxy, zyx.
Platforms: Matlab
License: Freeware | Size: 10 KB | Download (43): Euler angles to Quaternion Conversion (for six basic sequence of rotations) Download |
alculate the normalized partial energy sequence (NPES) for a given signal vector X.If a particular transform is capable of capturing the key features of a signal in few coefficients, the NPES will approach unity for relatively quickly.Ref: Percival and Walden, Wavelet Methods for Time Series...
Platforms: Matlab
License: Freeware | Size: 10 KB | Download (45): Normalised Partial Energy Sequence Download |
The PRBS are based on 3 to 9 bits memory delays and put out 2^3 -1 to 2^9 -1 binary sequence length. Usage: these generators can be used in process identification as noise source on command signal
Platforms: Matlab
License: Freeware | Size: 40.96 KB | Download (43): Simulink pseudo-random binary sequence generators Download |
NCBI Genome Workbench is an integrated application for viewing and analyzing sequence data. With Genome Workbench, you can view data in publically available sequence databases at NCBI, and mix this data with your own private data. Genome Workbench can display sequence data in many ways,...
Platforms: Mac
License: Freeware | Size: 35.54 MB | Download (40): Genome Workbench Download |
WinBlast is a handy, easy to use application specially designed to offer you a graphical front-end for NCBI BLAST.
Platforms: Windows
License: Freeware | Size: 1024 KB | Download (495): WinBlast Download |
Have you ever needed to generate easy to read Quality Reports for your DNA sequencing? Have you ever needed to sort your DNA trace files by quality? Have you ever needed to change the comments tag in your Chromatograms? If so, this software suite is for you.
This bundle includes: Mac Sequence...
Platforms: Mac
License: Freeware | Size: 2.8 MB | Download (58): Mac Sequence View for Mac OS Download |
Creates a software environment enabling users to make basic bioinformatics analyses and smooth data management, combined with excellent graphical viewing and output options.
Some bioinformatics features are:
- GenBank searching and viewing (linear and circular views)
- Multiple alignment of...
Platforms: Mac
License: Freeware | Size: 30.4 MB | Download (54): CLC Sequence Viewer for Mac OS Download |
CLC Sequence Viewer creates a software environment enabling users to make a large number of bioinformatics analyses, combined with smooth data management, and excellent graphical viewing and output options. Bioinformatics features in CLC Sequence Viewer Multiple alignment of DNA, RNA, and...
Platforms: Windows
License: Freeware | Size: 38 MB | Download (45): CLC Sequence Viewer 64-bit Download |