Ncbi
WinBlast is a handy, easy to use application specially designed to offer you a graphical front-end for NCBI BLAST.
Platforms: Windows
License: Freeware | Size: 1024 KB | Download (495): WinBlast Download |
This software is to help the those connected with Biology,Biotechnology,Bio Informatics.The user can select from the choices of proteins, nucleotides,etc(All those found on NCBI's website)and search for the specific results
Platforms: Windows, Mac, BSD, Linux
License: Freeware | Size: 10.56 KB | Download (47): NCBI Viewer Download |
Blast Viewer gives you a graphic interface to view reports produced by search systems in NCBI and EBI BLAST databases.Blast Viewer is a simple to use software designed for the daily analysis of biological sequences. It lets you view and analyze the enormous quantities of data that come from a...
Platforms: Windows
License: Freeware | Size: 5 KB | Download (277): Blast Viewer Download |
The Entrez Widget provides a quick access to the NCBI Databases. You just have to enter your search terms and the result will be displayed in a new browser window.
Platforms: Mac
License: Freeware | Download (105): Entrez Widget Download |
The BLAST widget provides a quick access to the Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.
Platforms: Mac
License: Freeware | Download (119): BLAST Widget Download |
Translated BLAST Widget provides a quick access to the Translated Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.
Platforms: Mac
License: Freeware | Download (92): Translated BLAST Widget Download |
Protein BLAST Widget provides a quick access to the Protein Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.
Platforms: Mac
License: Freeware | Download (103): Protein BLAST Widget Download |
Nucleotide BLAST Widget provides a quick access to the Nucleotide Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.
Platforms: Mac
License: Freeware | Download (115): Nucleotide BLAST Widget Download |
TB antibiotic resistance mapper was developed as a specialized tool that can help you map sequencing reads with the MTB reference genome (H37Rv) using NCBI blast, in order to find out mutation sites.
Now you can quickly discover mutations with the help of this instrument.
Platforms: Windows
License: Freeware | Download (415): TB antibiotic resistance mapper Download |
Perl Entrez Gene Parser project provides Perl parsers for NCBI's Entrez Gene based on regular expression, Parse::RecDescent, Parse::Yapp and Perl-byacc. Some can parse human genome annotations in minutes. Documentation and user guides are provided.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 35.3 KB | Download (45): Entrez Gene Parser in Perl Download |
JAMBLAST: Java Application Manager for the ncbi BLAST results. It is a graphic application that allow the user to display, filter, sort, import/export, store/manage BLAST results produced with the NOBLAST (https://sourceforge.net/projects/noblast).
Platforms: Windows, Mac, Linux
License: Freeware | Size: 4.29 MB | Download (44): jamblast Download |
ORFer reads the NCBI GenBank XML sequence format and extracts open reading frames for proteins. Sequences can be requested by GI or accession number. ORFprimer is an extended software package for high throughput PCR primer design for biological sequences
Platforms: Windows, Mac, BSD, Solaris, Linux
License: Freeware | Size: 240.93 KB | Download (47): ORFprimer - primer design for ORFs Download |
Sequin is a stand-alone software tool developed by the NCBI for submitting and updating entries to the GenBank sequence database. It is capable of handling simple submissions that contain a single short mRNA sequence, and complex submissions containing long sequences, multiple annotations, gapped...
Platforms: Mac
License: Freeware | Size: 63.48 MB | Download (34): Sequin Download |
NCBI Genome Workbench is an integrated application for viewing and analyzing sequence data. With Genome Workbench, you can view data in publically available sequence databases at NCBI, and mix this data with your own private data. Genome Workbench can display sequence data in many ways,...
Platforms: Mac
License: Freeware | Size: 35.54 MB | Download (40): Genome Workbench Download |
NCBI recently started a biological image search feature (http://www.ncbi.nlm.nih.gov/images). This extension adds a figure summary in these figures. The summaries are derived from UWM's FigureSearch (http://figuresearch.askhermes.org). Note that the summary appears only for figures in open access...
Platforms: *nix
License: Freeware | Size: 71.68 KB | Download (33): figuresummarizer Download |
ToBiX is a Morphix-based Linux live CD containing a range of specialist applications for bioinformatics. With this distrubution you just boot from the CD and you have a fully functional LINUX OS distribution with open source applications. Besides using some RAM, ToBiX doesnt touch the host...
Platforms: *nix
License: Freeware | Size: 457.2 MB | Download (91): ToBiX Download |
Bio::Tools::Run::TribeMCL is a method for clustering proteins into related groups, which are termed protein families. SYNOPSIS use Bio::Tools::Run::TribeMCL; use Bio::SearchIO; # 3 methods to input the blast results # straight forward raw blast output (NCBI or WU-BLAST) my @params =...
Platforms: *nix
License: Freeware | Size: 829.44 KB | Download (213): Bio::Tools::Run::TribeMCL Download |
DNALinux is a Linux distribution with bioinformatics software pre-installed. We believe that this distro fills an empty niche. Specialized biotech software usually is released as source code only and its not packaged for easy installation on "mainstream" Linux. Most scientific software is...
Platforms: *nix
License: Freeware | Size: 511 MB | Download (116): DNALinux Download |
BioBrew Linux is an open source Linux distribution that is enhanced for life scientists. It is customized for cluster and bioinformatics computing. It automates cluster installation, includes all the HPC software a cluster enthusiast needs, and contains popular bioinformatics applications....
Platforms: *nix
License: Freeware | Size: 1.93 GB | Download (120): BioBrew Linux Download |
Bio::Tools::CodonTable is a bioperl codon table object. SYNOPSIS # This is a read-only class for all known codon tables. The IDs are # the ones used by nucleotide sequence databases. All common IUPAC # ambiguity codes for DNA, RNA and animo acids are recognized. # to use use...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (127): Bio::Tools::CodonTable Download |