Mutation

TB antibiotic resistance mapper was developed as a specialized tool that can help you map sequencing reads with the MTB reference genome (H37Rv) using NCBI blast, in order to find out mutation sites. Now you can quickly discover mutations with the help of this instrument.

Recco analyzes alignments of sequences that evolved subject to recombination and mutation. The analysis provides evidence as to whether a dataset contains recombination, which sequence is a recombinant and where the recombination breakpoints are. The analysis is based on explaining one sequence...

The usual way to demonstrate saturation in nucleotide sequences is to plot the fraction of differences between sequences against the evolutionary distance separating them. When the number of observed differences, for example for the fraction of third codon positions, no longer increases with...


Platforms: Windows

Peach is a SmartFuzzer that is capable of performing both generation and mutation based fuzzing. Peach requires the creation of PeachPit files that define the structure, type information, and relationships in the data to be fuzzed. It additionally allows for the configuration of a fuzzing run...


Platforms: Windows

Black Panther - is a very common mutation of the leopard. Sometimes the normally colored parents appear one or two black kittens. Ordinary paint leopard - varying intensity yellow background, thickly dotted with black spots, that on the muzzle and tips of claws are considerably reduced in size,...


Platforms: Windows, Edition 2005

Mutator (mutation code framework) allows to evaluate the quality of unit tests prepared for a Java software application.


Platforms: Windows, Mac, Linux

The Genetic Algorithm Utility Library (or, GAUL for short) is a flexible programming library designed to aid in the development of applications that use genetic, or evolutionary, algorithms. It provides data structures and functions for handling and manipulation of the data required for serial...


Platforms: C and C plus plus

This function is a simple but flexible and usefull tool to implement genetic optimization algorithms that work with populations of custom units. This tool allows to customize the fitness function, the stopping criteria and the cross-over and mutation operators. This is a simple tool, written in...


Platforms: Matlab

Recent studies describe that the level of gene expression between species is positively correlated with the time that has passed since the species split from a common ancestor (Ranz et al., 2006). Moreover, Khaitovich et al. (2004) found a linear relationship between divergence time and...


Platforms: Mac

There is no good rule of thumb to determine the geolocation of Internet IP addresses. While some IP blocks tend to belong to certain countries, other IP blocks are distributed in an almost anarchic fashion. Moreover, the IP distribution is not static but in a continuous mutation with new...


Platforms: Windows

Being inspired by Diablo and Crimsonland, the game presents a mixture of Shooter and RPG. You get into the not-too-distant future, when the humanity depleted nearly all resources of the planet. The environment was polluted causing the mutation of the biosphere. You take a role of a lieutenant of...


Platforms: Windows

Amoebax is a cute and addictive action-puzzle game. Due an awful mutation, some amoeba's species have started to multiply until they take the world if you can't stop them. Fortunately the mutation made then too unstable and lining up four or more will make them disappear. Follow Kim or Tom...


Platforms: Windows, Mac

Module::Install::Philosophy Perl module contains the concepts behind Module::Install. SYNOPSIS This document describes the personal philosophy behind the creation of CPAN::MakeMaker (the predecessor of Module::Install). The views expressed here belong to Brian Ingerson; if they are not of...


Platforms: *nix

ImageSpace is OpenSource software running on Unix/X11 systems. ImageSpace is a genetic image generator, that means it generates and mutates mathematical functions while the users aesthetic perception is the fitness function, selecting an image which will be mutated. Since the functions are...


Platforms: *nix

There is quite a bit of history on this item. One of the assignments in a computer graphics course at the University of Victoria was to rotate a number of Bezier curves around an axis and display the result in 3D using a single light source. This was on Sun Sparcs using X. Since then the...


Platforms: *nix

Biogenesis project is a unicellular organism evolution simulator. Biogenesis simulates in a visual fashion the processes involved in the evolution of unicellular organisms in nature. It tries to be a didactic approximation to the ideas of mutation or evolution, and can be enjoyed also as an...


Platforms: *nix

Evocosm is a C++ Framework for Evolutionary Computing library. Evocosm is a set of classes that abstract the fundamental components of an evolutionary algorithm. Ill list the components here with a bit of introduction; you can review the details of the classes by downloading the code archives...


Platforms: *nix

Some people think that the panther and leopard - are different animals: panther black, and leopard spotted. In fact, this same animal, felines, just differently colored. They have a special structure of the larynx, which allows to issue a roar. The fact that representatives of the genus...


Platforms: Windows, Edition 2005

SimBac is a software package for simulating bacterial genome evolution. It outputs samples of DNA sequences at each generation & allows testing of major evolutionary mechanisms, including mutation, recombination, genetic drift, and natural selection.


Platforms: Windows, Mac, Linux

The program versusSNP is a flexible tool for mining SNPs between two close related genomes. First, we align all the orthologous genes and select SNPs, then the SNPs are separated into categories based on their mutation types.


Platforms: Windows, Mac, Linux