Mrna
Reverse transcription(RT) followed by PCR is a powerful tool for the detection and quantification of mRNA. It is the most sensitive method for the detection and quantification of gene expression levels, in particular for low abundance mRNA.The relative quantification is based on the expression...
Platforms: Matlab
License: Freeware | Size: 10 KB | Download (39): PCRefficiency Download |
JMotifFinder is a small graphical utility I wrote to quickly find DNA Motifs such as Primers in huge EMBL Files. If you load an EMBL file containing exon and mRNA information into JMotifFinder, it will graphically display the location of the exons and mRNA within the source sequence. You can...
Platforms: Mac
License: Freeware | Size: 3.19 MB | Download (36): Motif Finder Download |
Bio::SAGE::Comparison module compares data from serial analysis of gene expression (SAGE) libraries. SYNOPSIS use Bio::SAGE::Comparison; $sage = Bio::SAGE::Comparison->new(); This module provides several tools for comparing data generated from serial analysis of gene expression (SAGE)...
Platforms: *nix
License: Freeware | Size: 8.19 KB | Download (110): Bio::SAGE::Comparison Download |
Bio::SAGE::DataProcessing module processes raw serial analysis of gene expression (SAGE) data. SYNOPSIS use Bio::SAGE::DataProcessing; $sage = Bio::SAGE::DataProcessing->new(); # open sequence and quality files open( READS, "library.fasta" ); open( QUAL, "library.qual.fasta" ); #...
Platforms: *nix
License: Freeware | Size: 19.46 KB | Download (93): Bio::SAGE::DataProcessing Download |
ProtAnnot is a small, Java based application is a protein annotation viewer that displays protein annotations in the context of the genomic sequence.
This software is a making it easy to see how alternative mRNA structures affect the various protein products encoded at a locus. for WindowsAll
Platforms: Windows
License: Freeware | Download (400): ProtAnnot Download |
JMotifFinder is a small, simple, easy to use application designed to offer users a graphical utility to find DNA Motifs such as Primers in huge EMBL Files.
If you load an EMBL file containing exon and mRNA information into JMotifFinder, it will graphically display the location of the exons and...
Platforms: Windows
License: Freeware | Download (430): JMotifFinder Download |
Sequin is a stand-alone software tool developed by the NCBI for submitting and updating entries to the GenBank sequence database. It is capable of handling simple submissions that contain a single short mRNA sequence, and complex submissions containing long sequences, multiple annotations, gapped...
Platforms: Mac
License: Freeware | Size: 63.48 MB | Download (34): Sequin Download |
ICE Cafe is a software for viewing sequence chromatgram, and measuring peak intensity of each peaks. ICE Cafe is firstly developed for the purpose of detecting RNA Editing using ICE method. However, ICE Cafe also can be used when one uses conventional RNA Editing detection method in which...
Platforms: *nix
License: Freeware | Size: 41.83 MB | Download (37): ICE Cafe for Linux Download |