Mri

CSPHANTOM is a test phantom tailored to compressed sensing MRI algorithm development. It is designed to be non-sparse under a gradient transform and to contain features difficult to reproduce with partial Fourier sampling. We hope that this phantom can be used to evaluate the quality and accuracy...

This is a public release of a Matlab toolbox for working with data from electroencephalography (EEG/ERP) and magnetic resonance imaging (MRI). It contains functions to process and visualize ERP/MRI data and associated electrode positions.

A collection of code, bundled into a single R package, to perform several aspects of data management, image pre-processing, data analysis and statistical inference related to the quantitative analysis of dynamic contrast-enhanced MRI (DCE-MRI).


Platforms: Windows, Mac, Linux

You can read 3D ANALYZE MRI image and view it interactively in the three planes. It is simple and helpful for students and researchers in medical image processing.It is not perfect code and you can enhance it and add many things, it is just a good thing to start with.


Platforms: Matlab

These tools read and visualize Analyze MRI data files (.hdr, .img). Further work will create functions to write files. See http://eeg.sourceforge.net/ for more information and regular updates.


Platforms: Matlab

DSI Studio is a software for diffusion MRI processing, including DTI, DSI, and QBI reconstruction as well as fiber tracking. Among the features of DSI Studio are distributed computing and multithread calculation to generate tractographies as well as the ultrafast 3D engine based on DirectX....


Platforms: Windows

Mimics provides a bridge from CT/MRI data to: 3D computer models, optimized surface meshes, FE and CFD analysis, physical 3D models, surgical simulation, device and implant design and traditional CAD. Mimics can import any 2D stack of images and allows you to transform them into a 3D model with...


Platforms: Windows

This case study shows how MATLAB can be used for a medical imaging problem. Given an MRI scan, first segment the brain mass from the rest of the head, then determine the brain volume. Also compare portions of gray and white matter present. This example was developed for seminars. It was also used...


Platforms: Matlab

The function's input is just a 3D image. 3 orthogonal slice objects are created in a 3D space. You can grasp one image slice and move your mouse to see the changing image data on the slice. Their motions are confined to translations along the 3rd axis only. Thanks Anders Brun's contribution of...


Platforms: Matlab

Dimedris is a program for evaluation of MRI (Magnetic Resonance Imaging) images obtained by MRI device Siemens "Impact Expert" and similar devices. Images made on this device have ".ima" extension. This special format can not be read with any available freeware MRI viewer. It is significantly...


Platforms: Windows

Users load multiecho MRI data and draw ROIs. AnalyzeNNLS creates a T2 distribution from the averaged decay data. Regional fractions and geometric T2 times can be determined. Please reference: Bjarnason TA, Mitchell JR. JMR 206:200-4 (2010).


Platforms: Windows, Mac, Linux

froi (FS-FAST ROI) is a suite of Perl scripts and modules to provide easy slice-, volume-, and surface-based ROI analysis of functional MRI (fMRI) data analyzed by FS-FAST and Freesurfer (http://surfer.nmr.mgh.harvard.edu).


Platforms: Mac, BSD, Solaris, Linux

A simple yet powerful mesh generator based on matlab/octave language, making finite-element mesh from surfaces or arbitrary 3D volumetric images (such as MRI/CT scans) with fully automatic workflows.


Platforms: Windows, Mac, Linux

A flexible tool for medical research in magnetic resonance imaging (MRI) to generate parametric images (maps) from multiple types of pulse sequences (IR-prepared, Look-Locker, and MOLLI T1 mapping; single- and multi-echo T2/ T2* mapping).


Platforms: Windows, Mac, Linux

Raw MRI data are generated analytically from k-space coordinates using the (continuous) Shepp and Logan head phantom function. K -space coordinates are typically entered as 2D matrices (frequency and phase encodes).This tool is ideal for testing reconstruction of non-linear k-space trajectory MRI...


Platforms: Matlab

GMR returns the gyromagnetic ratio and other NMR properties for various nuclei as well as the electron.Besides the function format, the command format will work as well, e.g. "gmr Na23 hzpt 3.0".Format: y=gmr(nucleus,unit,b0) "nucleus" = string or number specifying the nucleus (not case...


Platforms: Matlab

Model Predictive Control based on linear models is widely used in the process Industry.A function is provided to fit a local linear model to a data set so that the model obtained is designed to perform predictions within a prediction window. The model is commensurate with the MPC control cost...


Platforms: Matlab

iSurf BrainView is a Brain MRI tutor based on the MRI automatic segmentation produced by FreeSurfer. FreeSurfer is a software package developed by investigators at the Athinoula A. Martinos Center for Biomedical Imaging. This App uses its automatic segmentation to produce an automatic atlas of...


Platforms: Mac

The MIPAV (Medical Image Processing, Analysis, and Visualization) application enables quantitative analysis and visualization of medical images of numerous modalities such as PET, MRI, CT, or microscopy. Using MIPAV's standard user-interface and analysis tools, researchers at remote sites (via...


Platforms: Mac

SIMRI: a versatile and interactive Magnetic Resonance Imaging (MRI) simulator.Such a simulator is a command line software written in C that reproduces the physical phenomenas encountered during an MRI acquisition to produce a realistic MRI image.


Platforms: *nix