Molecular Modelling

An award-winning Mac program for building, displaying and manipulating all kinds of crystal and molecular structures - with real-time photo-realistic graphics and 'out-of-the-screen' 3D display. CrystalMaker allows visualization of massive structures, with fast bond and polyhedra generation and...

A Molecular Biology software that provides tools with an intuitive interface to assists you in DNA cloning, sequence analysis and visualization. Serial Cloner 2.1 handles Features/Annotations and now allows to define, import and export, customized lists of Features. User can annotate any sequence...

Although a large number of tools for the three-dimensional visualization of molecular structures exists, it often proved convenient to tailor a visualization tool specifically for a certain purpose. In BALL, we chose two complementary approaches. First, we wanted to give the user the full...


Platforms: Mac

A minimalistic tool for molecular phylogenetics able to recover phylogenies from nucleotide sequences. PhyloCoco uses the likelihood or the minimum evolution criterion, and automatically selects the best substitution model of DNA evolution for the dataset analyzed.PhyloCoco key-features are: -...


Platforms: Mac

StochPy (Stochastic modelling in Python) is an easy-to-use package, which provides several stochastic simulation algorithms (SSAs), which can be used to simulate biochemical systems in a stochastic manner. Further, several unique and easy-to-use analysis techniques are provided by StochPy....


Platforms: Windows

StochPy (Stochastic modelling in Python) is an easy-to-use package, which provides several stochastic simulation algorithms (SSAs), which can be used to simulate biochemical systems in a stochastic manner. Further, several unique and easy-to-use analysis techniques are provided by StochPy....


Platforms: Mac

StochPy (Stochastic modelling in Python) is an easy-to-use package, which provides several stochastic simulation algorithms (SSAs), which can be used to simulate biochemical systems in a stochastic manner. Further, several unique and easy-to-use analysis techniques are provided by StochPy....


Platforms: Linux

Striker is a physical modelling instrument created to reproduce the sounds of various types of tuned percussion such as marimbas, vibraphones and other instruments where a hammer or mallet strikes a block. Striker will allow music enthusiasts enhance their sounds with exotic new ones.


Platforms: Windows

Rather than use a large sample library, Cathedral uses a hybrid analogue synthesis and physical modelling approach to create an ultra-flexible instrument without a huge file size and with reasonable CPU performance. Cathedral offers up to 6 programmable, 4-level stops that can each be set to 1...


Platforms: Windows

Super String Thing is a comprehensive physical modelling synthesizer that will generated a wide range of both natural and un-natural acoustic tunes. Anything from guitars, through bowed strings, flutes and bells to atmospheric textures can be produced using the unique synth engine of Super...


Platforms: Windows

Get vast information regarding all the elements of the modern Periodic Table. Download this one and you’ll never find yourself short of information about the elements that make this universe. This Periodic Table contains the following information about the 116 elements known to man. * Name *...


Platforms: Windows, Java

AstroChip is a language for modelling chips. You can use it for learning the first basics of chipdesign. An intelligent compiler helps finding errors and chips can be tested.


Platforms: Windows, Java

Ascalaph Graphics is a handy, easy-to-use program designed to provide a graphical interface of the system. The program includes the window interface and three-dimensional graphics of molecular models. Ascalaph Graphics shows molecular models in separate windows. Each window has two cameras,...


Platforms: Windows

The ART testbed program allows researchers to compare their work from a practical point of view in the modelling of trust in agent societies.


Platforms: Windows, Mac, Linux

A rule-based modelling framework for allosteric proteins and biochemical networks.


Platforms: Windows, Mac, Linux

CAMFR (CAvity Modelling FRamework) is a fast, flexible, friendly full-vectorial Maxwell solver. Although it can tackle general electromagnetic problems, its main focus is on applications in the field of photonics.


Platforms: Windows, Mac, Linux

The Automatic Model Optimization Reference Implementation, AMORI, is a framework that integrates the modelling and the optimization processes by providing a plug-in interface for both. A genetic algorithm and Markov simulations are currently implemented.


Platforms: Windows, Mac, Linux

BETR-Research (BETRS) is a modelling framework to create spatially resolved multimedia models for the environmental fate- and transport of chemical contaminants. It is intended to serve the research community and can be used as a teaching tool.


Platforms: Windows, Mac, BSD, Linux

The bflow* Toolbox is an open source tool kit for business process management. The objective of bflow* is to explore new ways and scenarios for the development and use of modelling tools.


Platforms: *nix

3D cellular automata modelling software for large general purpose simulations. Uses custom scripts for rules and can distribute processing over several machines.


Platforms: Windows, Mac, Linux