Molecular Modelling

PaDEL-Descriptor is a handy utility designed to perform molecular calculation. It calculates 797 descriptors (663 1D, 2D descriptors and 134 3D descriptors) and 10 types of fingerprints.

Art of Illusion is a free, open source 3D modelling and rendering studio. Many of its capabilities rival those found in commercial programs. Highlights include subdivision surface based modelling tools, skeleton based animation, and a graphical language for designing procedural textures and...

Art of Illusion is a free, open source 3D modelling and rendering studio. Many of its capabilities rival those found in commercial programs. Highlights include subdivision surface based modelling tools, skeleton based animation, and a graphical language for designing procedural textures and...


Platforms: Mac

Art of Illusion is a free, open source 3D modelling and rendering studio. Many of its capabilities rival those found in commercial programs. Highlights include subdivision surface based modelling tools, skeleton based animation, and a graphical language for designing procedural textures and...


Platforms: Linux

GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. It is primarily designed for biochemical molecules like proteins, lipids and nucleic acids that have a lot of complicated bonded...


Platforms: Mac, Linux

Event-B is a formal method for system-level modelling and analysis. Key features of Event-B are the use of set theory as a modelling notation, the use of refinement to represent systems at different abstraction levels and the use of mathematical proof to verify consistency between refinement...


Platforms: Windows, Mac, *nix, Java, BSD Solaris

Umbrello UML Modeller is a Unified Modelling Language diagram programme for KDE. UML allows you to create diagrams of software and other systems in a standard format. Our handbook gives a good introduction to Umbrello and UML modelling.


Platforms: *nix

This m-file gives the atomic weight of any element or molecular weight of any chemical species.Input:species = (cell array)The species is the 'formula'.Output:Atomic weight of any element or molecular weight of any chemicalspecies.


Platforms: Matlab

This is set of functions that allow opening of Molecular Imaging atomic force microscope files into Matlab matrix. Unzip the files in one directory and type in Matlab command prompt:y=ReadSTP('pathfilename.stp',buffer number).Matrix y will contain z values of measured surface. Comments will show...


Platforms: Matlab

WoPeD (Workflow Petri Net Designer) is an open-source software developed at the Cooperative State University Karlsruhe under the GNU Lesser General Public License (LGPL). The main goal of this tool is to provide an easy-to-use software tool for modelling, simulating and analyzing workflow process...


Platforms: Mac

Gene Studio is a free tool for modelling of DNA manipulation. It will allow to work with vectors, to design primers, to clone molecules and provide user friendly intewrface.


Platforms: Mac

Path-O-Gen is a tool for investigating the temporal signal and 'clocklikeness' of molecular phylogenies. It can read and analyse contemporaneous trees (where all sequences have been collected at the same time) and dated-tip trees (where sequences have been collected at different dates). It is...


Platforms: Mac

Flow4J-Eclipse is a plugin for the eclipse IDE that enables the modelling of process flows in a drag and drop manner. Building a Flow4J project creates the flow's java source code and is then compiled by the JDT plugin. Uses the eclipse-gef framework.


Platforms: *nix

This program compilation offers complete control of a Bioloid robot including a 3d visualisation, xml-based robot modelling, a custom scripting language, the capture of robot movement, a custom firmware, different interpolation types and much more!


Platforms: *nix

3D cellular automata modelling software for large general purpose simulations. Uses custom scripts for rules and can distribute processing over several machines.


Platforms: *nix

Ascalaph Graphics is a program for molecular graphics and dynamics, as well as a graphical shell to package of molecular dynamics MDynaMix. Features: Molecular graphics Multiple windows Two cameras per model CPK, Wire frame, Stick, Ball and Stick and CPK Wire frame styles Molecular...


Platforms: *nix

gOpenMol is a tool for the visualization and analysis of molecular structures and their chemical properties. The program uses Tcl/Tk scripting engine and can thus be easily extended without modifying the kernel code. gOpenMol can also be extended by writing extensions using sharable objects...


Platforms: *nix

The performance Organiser is organisation modelling software designed to support a number of best practice management analysis techniques. It is a general purpose business analysts tool kit.

Build a complex 3D Model of a Police Helicopter.All ages will have fun learning the basics of 3D modelling with this interactive 3D graphics program. It challenges you to build a complex 3D model with the option of 4 difficulty levels: No Brainer, Easy, Okay and Hard.You can unlock up to 9...


Platforms: Windows

EMBOSS is "The European Molecular Biology Open Software Suite", it is a free Open Source software analysis package specially developed for the needs of the molecular biology user community. The software automatically copes with data in a variety of formats and even allows transparent retrieval of...


Platforms: Most OSs