Molecular Modeling Software

Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. This project offers a flexible rendering engine and a powerful plugin architecture. The main concept behind Avogadro...

TiTaN UML is a Web Application UML modeling software built in JAVA. Every web application, such as Applets or any PHP script, must pass though a modeling proccess, for it to be more effective, and more comprehensive.

With MeshMagic 3D, viewing and editing stl files has never been easier. Import STL files created with CAD and drafting software. You can then use MeshMagic to rotate and rescale the existing meshes. MeshMagic is an excellent 3D modeling program for viewing and editing STL files. The interface is...


Platforms: Windows, Windows 8, Windows 7

KLDraw is 3D LEGO modeling software for KDE. KLDraw project uses LDraw part library and using OpenGL for rendering model on the screen. You can create virtual 3D LEGO model easily by using this application. Features: * Multipart model support * Multi-document interface * Stores part database...


Platforms: *nix

ARIS Express is based on the proven ARIS methodology and industry standards. Its intuitive user interface and the latest improvements in modeling assistances enable instant results. This free version will appeal to universities and vocational schools, as well as BPM beginners and occasional...


Platforms: Windows, Mac, *nix, Windows 7, Java,Other

BALLView is our standalone molecular modeling and visualization application. Furthermore it is also a framework for developing molecular visualization functionality. It is available free of charge under the GPL for Linux, Windows and MacOS. It provides fast OpenGL-based visualization of...


Platforms: Windows

Signal Processing using C++ (SPUC) is a C++ source code library of DSP and digital communication classes and functions useful for system modeling, software prototyping, and simulation. The objective of SPUC is to provide the Communications Systems Designer or DSP Algorithm designer with simple,...


Platforms: *nix

FlyCarpet is a visual modeling software platform for dynamic / static system design / optimization / simulation, it models multi-industry system with components and platform features, so this software can be used for many fields as fluid, fluid power, control, mechanics, chemics,...


Platforms: Windows

A Molecular Biology software that provides tools with an intuitive interface to assists you in DNA cloning, sequence analysis and visualization. Serial Cloner 2.1 handles Features/Annotations and now allows to define, import and export, customized lists of Features. User can annotate any sequence...


Platforms: Mac

Curve Captor is a free (distributed under GPL) vacuum tube modeling software that brings the advantages of modern computer simulation tools to design of vacuum tube electronics.


Platforms: Windows, Mac, Linux

A Java based molecular modeling program. Has support for generating movies by interpolating between given positions, interactive display and manipulation of atoms and bonds, and dynamic modeling of substance formation.


Platforms: Windows, Mac, Linux

GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. It is primarily designed for biochemical molecules like proteins, lipids and nucleic acids that have a lot of complicated bonded...


Platforms: Mac, Linux

The Biomolecule Toolkit is a library for modeling biological macromolecules such as proteins, DNA and RNA. It provides a C++ interface for common tasks in computational structural biology to facilitate and standardize the development of molecular modeling, design and analysis tools.


Platforms: *nix

Biomolecule Toolkit project is an Open Source library for the structural modeling of biological macromolecules. The toolkit provides a C++ interface for common tasks in computational structural biology, to facilitate the development of molecular modeling, design, and analysis tools. Whats New...


Platforms: *nix

SDE for NetBeans is a UML CASE tool/plug-in tightly integrated with NetBeans. This UML modeling software supports full software lifecycle - analysis, design, implementation, testing and deployment. This UML CASE tool helps you build quality applications faster, better and cheaper. You can draw...


Platforms: Windows, Mac, Linux, Java

Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas.


Platforms: *nix

Vigyaan is an electronic workbench for bioinformatics, computational biology and computational chemistry. It has been designed to meet the needs of both beginners and experts. VigyaanCD is a live Linux CD containing all the required software to boot the computer with ready to use modeling...


Platforms: *nix

KnowledgeMiner (yX) for Excel Free – Entry-Level Knowledge and Data Mining for Everybody. Simple, objective, fast. Develop reliable predictive models in only two steps. You know about the value of your data? Find unknown relevant relationships in your scientific, business or personal data...


Platforms: Mac

Animadead is a skeletal animation library designed to load and play skeletal animations. Animadead supports models that are composed of several swappable meshes bound to a single skeleton that can be driven by multiple animations. There is an export plug-in for Maya, and others are in...


Platforms: *nix

Serial Cloner is a light molecular biology software. Serial Cloner reads and write DNA Strider-compatible files and import and export files in the universal FASTA format (as well as in pDRAW32 format). Powerful graphical display tools and simple interfaces help the analysis and construction steps...


Platforms: Mac