Molecular Fingerprint

PaDEL-Descriptor is a handy utility designed to perform molecular calculation. It calculates 797 descriptors (663 1D, 2D descriptors and 134 3D descriptors) and 10 types of fingerprints.

Hidden Markov models are used to describe the "stepping" behavior of molecular motors, as measured by single-molecule fluorescence techniques. Our HMM implementation is more versatile than the one described by Milescu, et al. Biophys. J. 91:3135-3150 and can be used as a "blind" step detector or...

ORMA (Oligonucleotide Retrieving for Molecular Applications) is a series of integrated scripts in Matlab, which performs an accurate search of all the positions able to specifically discriminate one species among homologous ones. ORMA also performs an accurate selection of high-quality...


Platforms: Matlab

The EJS Molecular Dynamics model is constructed using the Lennard-Jones potential truncated at a distance of 3 molecular diameters. The motion of the molecules is governed by Newton's laws, approximated using the Verlet algorithm with the indicated time step. For sufficiently small time steps dt,...


Platforms: Mac

The EJS Molecular Dynamics Demonstration model is constructed using the Lennard-Jones potential truncated at a distance of 3 molecular diameters. The motion of the molecules is governed by Newton's laws, approximated using the Verlet algorithm with the indicated Time step. For sufficiently small...


Platforms: Mac

The Molecular Dynamics Adiabatic Piston model shows two gas samples within a horizontal cylinder that is divided by an insulated piston that moves without friction. It is a supplemental simulation for an article by Eric Gislason "A close examination of the motion of an adiabatic piston" in the...


Platforms: Mac

Fingerprint Verification System; an easy to use library that allows programmers to integrate fingerprint technology into their software without specific know-how. Fast, easy to use, and small; great for embedded systems.


Platforms: *nix

USB fingerprint scanners (i.e. Hamster IV, Hamster Plus) help you capture fingerprint images. These devices get plugged into the USB port of your computer. In order to use these devices in your application, you need legacy driver. It allows scanners to communicate with your computer. Usually...


Platforms: Windows, Windows 8, Windows 7, Windows Server

In order to use biometric devices in your application, you need driver for your scanners. Fingerprint scanner driver allows biometric devices to communicate with your computer. Software developers can use this driver in their application along with a fingerprint SDK (software development kit)....


Platforms: Windows, Windows 8, Windows 7, Windows Server

PFMD performs a Molecular Dynamics simulation of some polarizable fluids at the liquid state by means of a dissociable potential. Supported molecules are H2O (water) and MX3, where M is a metal among Al, Fe, or Ga and X is a halogen among Cl, Br, or I.


Platforms: Windows, Mac, Linux

PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source PyMOL is free to everyone!


Platforms: Windows, Mac, BSD, Solaris, Linux

NanoVis (beta version) allows to visualize any atomistic structure by reading a user defined file. The supported formats are "gen" and "xyz". There are two display modes: normal and "spacefill". In the zip file, with the .m file, there are two examples of structure and a file containing the atoms...


Platforms: Matlab

This is a fingerprint matching code based on the fingerprint matching algorithm found in the upcoming book chapter (published in July 2011):Book title: State of the art in Biometrics (ISBN 978-953-307-489-4)Chapter title: Fingerprint Matching using A Hybrid Shape and Orientation...


Platforms: Matlab

BioCert Biometric Authenticator Lite Edition - 10 Users Our standard software programming toolkit offers 1:m matching capability up to 10 users. A step beyond a SDK, the BioCert Authenticator toolkit is a simple ActiveX drop in that takes care of user enrollment and Identification. This toolkit...


Platforms: Windows

A utility to see if any files in one or more directories have been created, deleted, or changed since the last scan. It's useful for checking if a program, e.g. viruses and trojans, has changed your all-important Windows files (this is similar to such security software as Tripwire). The use...


Platforms: Windows

Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. This project offers a flexible rendering engine and a powerful plugin architecture. The main concept behind Avogadro...


Platforms: *nix

Fingerfox works like a workaround to make MS Fingerprint Reader fill the forms of a web page shown in Firefox. To avoid security problems (with login and password storage in particular), it relies with DigitalPersona to do it and just act as a popup window which repeats the login forms (including...


Platforms: *nix

yoursql project is a mysql version fingerprint tool written in C. This will only work on hosts that actually let you connect, if you are blocked by an ACL, this wont work..


Platforms: *nix

Bio::MCPrimers is a Perl module to create molecular cloning PCR primer pairs for a given gene so that the gene can be directionally inserted into a vector. Solver is generic, restriction enzymes and their order in the vector are specified in the caller. XPORT SUBROUTINES sub find_mc_primers...


Platforms: *nix

LAMMPS project is a Molecular Dynamics Simulator. LAMMPS has potentials for soft materials (biomolecules, polymers) and solid-state materials (metals, semiconductors) and coarse-grain systems. It can be used to model atoms or, more generically, as a parallel particle simulator at the mesoscale...


Platforms: *nix