Molecular Dipole Moments

A Molecular Chemical Viewer using OpenGL and Platform independent provided for the study of Chemicals, including physical, chemical and visual properties.

CrystalDock analyzes a molecular pocket of interest and identifies potential binding fragments. These fragments can be linked together to produce potent ligands; alternatively, they can be joined to a known inhibitor to improve binding affinity.

This is the first force-matching software published with the ability to do general coarse-graining for molecular systems.


Platforms: Windows, Mac, Linux

Janocchio is an application or applet for viewing 3D molecular structures and calculating NMR couplings and NOEs


Platforms: Windows, Mac, Linux

LineageEvolver is a simulation system for molecular evolution. Sequence evolution is simulated using modular processes such as substitutions, gene duplication/death, horizontal gene transfer, and more.


Platforms: Windows, Mac, Linux

jSim for Gromacs is a Graphical User Interface for the Molecular Dynamics Package Gromacs. It has a project style interface to organize your md simulations. It is also possible to start md simulations on remote computers with ssh.


Platforms: Windows, Mac, Linux

This project aims to develop a cross platform environment for utilisation of various open source and freely available molecular dynamics and bioinformatics tools. Some extra features are included such as protein hydrophobicity and hydrophilicity plots.


Platforms: Windows, Mac, Linux

Easy install web server for Genetic and Molecular Biological Laboratory so that PI can update lab homepage himself. Also serve as Lab database server that store DNAStrider plasmid , order tracking and mouse colony database.


Platforms: Windows, Mac, Linux

MCDL is a small Java molecular viewer/editor for chemical structures, stored in Modular Chemical Descriptor Language linear notation. Features include accurate structure diagram generation, and Kekule chemical structure creation from aromatic bond list.


Platforms: Windows, Mac, Linux

MDDriver is a library allowing a user to easily couple molecular visualisation tools with simulation code through a network. It allows to carry out interactive molecular dynamics, visualize simulation results and drive a simulation in interactive time.


Platforms: *nix

A Java based molecular modeling program. Has support for generating movies by interpolating between given positions, interactive display and manipulation of atoms and bonds, and dynamic modeling of substance formation.


Platforms: Windows, Mac, Linux

Molsketch is a 2D molecular editing tool. Its goal is to help you draw molecules quick and easily. Of course you're creation can be exported afterwards in high quality in a number of vector and bitmap formats.


Platforms: Windows, Mac, Linux

Given the chemical formula, MolWgt calculates the molecular weight of a substance.


Platforms: Mac, BSD, Linux

NOC is a open source development toolkit and a powerful molecular explorer for protein structure visualizing,analysis,crystallographic mapping, modeling, and refinement, Gromacs/Amber MD trajectories displaying,movie making...


Platforms: Windows, Mac, BSD, Linux

A database to handle voucher specimens of DNA sequences used for molecular phylogenetics.


Platforms: Windows, Mac, Linux

Octet is an object-oriented molecular representation framework written in Java.


Platforms: Windows, Mac, Linux

'Plasmidb' is a database management system (RDMS) used to manipulate, view and store molecular biology information rapidly and easily. Editable information includes: constructed plasmids, clones, standard vectors, primers, antibiotics, enzymes and more


Platforms: Windows, Mac, Linux

PSI is an open-source program for computing molecular properties using high-accuracy, ab initio, quantum mechanical models.


Platforms: Mac, BSD, Linux

A 3D viewer for molecular charge distributions.Implemented in OpenGL with GLUT.Includes a small OpenGL windowing library/widget set.


Platforms: Windows, Mac, BSD, Linux

A utility for animating molecular vibrations. Normal modes are read from a file automatically determined to be from Aces2, Gamess, PC Gamess, Gaussian 90/92/95/94/98, ADF, Dalton, Jaguar, MOPAC, or Spartan.


Platforms: Windows, Mac, Linux