Microarray Gene Analysis

MeV or Multiple Experiment Viewer is a Java tool to help you with microarray gene expression data analysis. MeV supports 5 input formats, and provides an intuitive graphical interface for clustering, classification, statistical analysis and theme discovery. Platforms: Windows

MeV or Multiple Experiment Viewer is a Java tool to help you with microarray gene expression data analysis. MeV supports 5 input formats, and provides an intuitive graphical interface for clustering, classification, statistical analysis and theme discovery. Platforms: Mac

EPTable is a simple web-based tool to analyze microarray gene expression profiles with additional gene profiles. Platforms: Mac, BSD, Linux

Microarray Gene Expression Database Group and OMG Gene Expression Standard (MAGE) Platforms: Windows, Mac, Linux

The application loads microarray data (gene expression ratios) and determines which genes are up- or downregulated by a user-defined ratio cut-off level. For each experiment, lists of differentially expressed genes are computed. Every list will be compared to every other list, and the number of... Platforms: Windows

Bio::SAGE::Comparison module compares data from serial analysis of gene expression (SAGE) libraries. SYNOPSIS use Bio::SAGE::Comparison; $sage = Bio::SAGE::Comparison->new(); This module provides several tools for comparing data generated from serial analysis of gene expression (SAGE)... Platforms: *nix

Bio::SAGE::DataProcessing module processes raw serial analysis of gene expression (SAGE) data. SYNOPSIS use Bio::SAGE::DataProcessing; $sage = Bio::SAGE::DataProcessing->new(); # open sequence and quality files open( READS, "library.fasta" ); open( QUAL, "library.qual.fasta" ); #... Platforms: *nix

The CMVE toolbox estimates missing values by using correlation structure of the data. The software can be used to impute missing values in any correlated data especally microarray gene expression data. The imputation performance of the software has proven significant affect on gene regulatory... Platforms: Matlab

siliColony is a small, simple, easy to use application specially designed to offer you a tool to help you estimate the probability that a modifier gene is responsible for the segregation of phenotypes. for WindowsAll Platforms: Windows

This package is the mRMR (minimum-redundancy maximum-relevancy) feature selection method in (Peng et al, 2005 and Ding & Peng, 2005, 2003), whose better performance over the conventional top-ranking method has been demonstrated on a number of data sets in recent publications. This version uses... Platforms: Matlab

MCGH is a Matlab toolbox with graphical interface to analysis DNA microarray-based comparative genomic hybridization (CGH) experiments. CGH on DNA microarray enable us to measure the copy numbers of thousands of genes through the genome. M-CGH allows us to visualize the copy number changes... Platforms: Matlab

In one type of gene expression analysis, fluorescently tagged messenger RNA from different cells are hybridized to a microscopic array of thousands of complimentary DNA spots that correspond to different genes. Illuminated spots emit different color light, indicating which genes are expressed... Platforms: Matlab

a simple function that returns a colormap, C, for visualizing gene expression. C is just a N x 3 matrix [R G B] describing the range of color values.example usage: C = exp_colormap('blue-yellow',64); colormap(C);called without any arguments, it returns a [3 x 64] green-red colormap.options for... Platforms: Matlab

ErmineJ performs analyses of gene sets in expression microarray data or other genome-wide data that results in rankings of genes. A typical goal is to determine whether particular biological pathways are "doing something interesting" in the data. The software is designed to be used by biologists... Platforms: Mac

Stock Price Analysis provide a free web based stock price analysis module. The easy to use interface incorporates Fundamental Analysis to calculate: Fair Value stock price; comparative stock Value; profit Target sell price; Stop Loss sell price; Price Earnings Ratio (PE) for Fair Value and Buy... Platforms: Windows, Mac

BASE is the Basic Analysis and Security Engine. It is based on the code from the Analysis Console for Intrusion Databases (ACID) project. This application provides a web front-end to query and analyze the alerts coming from a SNORT IDS system. BASE is a web interface to perform analysis of... Platforms: *nix

Market Analysis System (MAS) is an open-source software application that provides tools for analysis of financial markets using technical analysis. Market Analysis System provides facilities for stock charting and futures charting, including price, volume, and a wide range of technical analysis... Platforms: *nix

Directory Analysis Tool is used to analyze LDAP directories and report on their contents. Useful if you want to find inactive accounts, people who havent changed passwords, or who has administrator privileges.. Platforms: *nix

TA-Lib provides common functions for the technical analysis of stock/future/commodity market data. TA-Lib can be reused by trading software developers using Excel, .NET, Java, Perl or C/C++.. Technical analysis open-source software library to process financial data. Provides RSI, MACD,... Platforms: *nix

GENE Graph Export Engine is an advanced XML exporter. GENE Graph Export Engine is a complex convertor/framework for multi-namespace XML transforming and exporting. It is able to convert various XML types including SVG, DocBook, MathML, XSL-FO, and their combinations into a wide area of output... Platforms: *nix