Medline

Peptide::Pubmed is a Perl module that can extract peptide sequences from MEDLINE article abstracts. SYNOPSIS use Peptide::Pubmed; $parser = Peptide::Pubmed->new; $in = { PMID => q[15527327], Author => q[Doe JJ, Smith Q], Journal => q[J Biological Foo. 2004;8(2):123-30.], Title => q[Foo,... Platforms: *nix

BioMail is a small web-based application for medical researchers, biologists, and anyone who wants to know the latest information about a disease or a biological phenomenon. It is written to automate searching for recent scientific papers in the PubMed Medline database.Periodically BioMail does a... Platforms: *nix, Perl, BSD

biblio.PLS is a bioperl client for accessing and querying a bibliographic repository. SYNOPSIS Usage: biblio.PLS [vh] biblio.PLS [bcFgOpq] [-l < URL >] biblio.PLS [abcdDeFknmOpqrs] [-l < URL >] -i < collection-ID > biblio.PLS [abcdDeFknmOpqrs] [-l < URL >] - -find < keywords > [-attrs... Platforms: *nix

Pybliographer is a tool for managing bibliographic databases. Pybliographic can be used for searching, editing, reformatting, etc. In fact, its a simple framework that provides easy to use python classes and functions, and therefore can be extended to many uses (generating HTML pages according... Platforms: *nix

RefSense is the name of both a web interface to PubMed, and a set of command line tools for accessing PubMed. RefSense was previously distributed as Biblio. The web interface provides easy access to PubMeds data as well as some useful tools not found at the actual PubMed site. The command... Platforms: *nix

Bio::Biblio is a Bibliographic Query Service module. SYNOPSIS use Bio::Biblio; my $biblio = new Bio::Biblio; print $biblio->find (perl)->get_count . "n"; my $collection = $biblio->find (brazma, authors); while ( $collection->has_next ) { print $collection->get_next; } #The new()... Platforms: *nix

PubMedMaker is a bibliographic application for those in the fields of medicine and biology. It will convert PubMed data to FileMaker Pro files simply by dragging and dropping. PubMed is a free on-line web site for MEDLINE offered by National Library of Medicine. PubMedMaker also makes Reference... Platforms: Mac

PubMedMaker is bibliography software, similar in principle to EndNote, Pro-Cite and Reference Manager. This shareware program is designed for anyone who wishes to manage medical literature data with FileMaker Pro database. We aim at easy to use and intuitional operation for managing MEDLINE data.... Platforms: Mac

JabRef is an open source bibliography reference manager. The native file format used by JabRef is BibTeX, the standard LaTeX bibliography format. JabRef runs on the Java VM (version 1.5 or newer), and should work equally well on Windows, Linux and Mac OS X. BibTeX is an application and a... Platforms: *nix

JabRef is an open source bibliography reference manager. The native file format used by JabRef is BibTeX, the standard LaTeX bibliography format. JabRef runs on the Java VM (version 1.5 or newer), and should work equally well on Windows, Linux and Mac OS X. Features Advanced BibTeX editor... Platforms: Mac

Pybliographer is a tool for managing bibliographic databases. You can either use its graphical interface (based on Gnome) which provides powerful editing capabilities, a nice hierarchical search mechanism, direct insertion of references into LyX and Kile, direct queries on Medline, and more. Or... Platforms: *nix, Python, BSD

JabRef is an open source bibliography reference manager. The native file format used by JabRef is BibTeX, the standard LaTeX bibliography format. JabRef runs on the Java VM (version 1.5 or newer), and should work equally well on Windows, Linux and Mac OS X. Bibliographies generated by LaTeX and... Platforms: Windows, Mac, *nix, Java, BSD Solaris

As part of implementation of CMS for Biomedical applications, it is often a requirement to display publications from well known databases. One such database is called PubMed which is provided National Center for Biotechnology Information, National Library of Medicine and National Institutes of... Platforms: PHP