Limiting Amino Acid In A Protein

BASILISK is a probabilistic model of the conformational space of amino acid side chains in proteins. Unlike rotamer libraries, BASILISK models the chi angles in continuous space, including the influence of the protein's backbone.

The futility of material enjoyment, everyone wants to be happy, but generally we can find only a little happiness and affection in this world. Why is it that even people who seem to have everything are unhappy, in spite of their wealth and opulence. Ultimately, the body is bound to become ashes...

Toolkit to examine the topology of a phylogenetic tree, place amino acid substitutions on specific branches, polarize them and compare amino acid sequences of homologous proteins to answer a wide range of questions about protein evolution.


Platforms: Windows, Mac, Linux

BiasViz is a Java applet for visualization of amino acid bias in multiple sequence alignments.


Platforms: Windows, Mac, Linux

Stokesian Dynamics, a method developed by Brady and Bossis in the 80s, simulates the 3D motion of hydrodynamically interacting spheres at low Reynolds numbers. This program was originally written by Professor Ron Phillips during his PhD thesis at MIT in 1989. The code was adapted from Fortran 77...


Platforms: Matlab

SFIAB is a complete science fair management system written in PHP with MySQL backend database. It manages all aspects of running a school, city, regional, etc science fair from registration to awards ceremony.The SFIAB is implemented using open-source tools wherever possible, creating a truly...


Platforms: PHP

A function for listing the terms of a node on a page is also included.InstallationUnpack in your modules folder (usually '/sites/all/modules/')Enable under Administer > Site Building > Modules.


Platforms: PHP

CodonW is a programme designed to simplify the Multivariate analysis (correspondence analysis) of codon and amino acid usage. It was written in ANSI compliant C. See the README file for more information.


Platforms: *nix

A Jacks Game is a real-time game that runs in a Web browser using the AJAX (Asynchronous JavaScript and XML) technology. Multiple users can login in A Jacks Game to explore a common map and earn a common currency as their score. A Jacks Game is free software released under GNU/GPL Open Source...


Platforms: *nix

Sharpen plug-in provides a sharpening filter to enhance the edges in a blurry image. Using the Sharpen Plug-In Figure 1 shows the sharpen plug-in window. The scrollbars allow you to pan within the image (in this case to the back of the duck in the foreground). The preview window shows the...


Platforms: *nix

ProtAnnot is a small, Java based application is a protein annotation viewer that displays protein annotations in the context of the genomic sequence. This software is a making it easy to see how alternative mRNA structures affect the various protein products encoded at a locus. for WindowsAll


Platforms: Windows

The FastPCR software was developed to be an integrated tools environment that provides comprehensive facilities for designing primers for most PCR applications including standard, long distance, inverse, real-time, multiplex, unique and group-specific; overlap extension PCR (OE-PCR)...


Platforms: Windows, XP, 2003, Windows Vista, XPX64, 7, 7x64

Designed to reduce the level of the main vocal track in a stereo music audio file. VoxReducer II includes four factory presets designed for different musical genres. These include Jazz, Light Rock, Hard Rock, and Metal. voxReducer II has been updated with a graphical user interface for easily...


Platforms: Mac

This Automator-based OS X application collects Email Addresses from all text files in a specified folder, sorts them, removes duplicates, and saves the results to a file in the same folder named 'email_addresses_from_files.csv'.


Platforms: Mac

This free game tells the story of a trip Heileen did for her 16th birthday in a small village in Bavaria. There she will met Magdalene who will become a very good friend, but...what are her real intentions?


Platforms: Mac

You are Kelly, a rising star in a mall development company. You become a world class mall developer by creating exciting malls with interesting stores. Upgrade the stores to attract more customers and earn more money. Create A Mall is the first game where you can then use the money to buy...


Platforms: Mac

Create your own fantastic world in a few seconds with this 3D scifi tattoo font.


Platforms: Mac

CodonW is a programme designed to simplify the Multivariate analysis (correspondence analysis) of codon and amino acid usage. It was written in ANSI compliant C. See the README file for more information.


Platforms: Windows, Mac, BSD, Linux

Superficially, Dominoes on Acid is a solitaire variant of Dominoes with weird colorful tiles. But on a deeper level it is a GUI for natural deduction. Every completed domino is equivalent to a proof of a tautology in classical propositional logic.


Platforms: Windows, Mac, Linux

This script uses string.index(sub) function which returns a list of indices of ALL occurances of a substring in the string.


Platforms: Windows, Mac, *nix, Python, BSD Solaris