Download Shareware and Freeware Software for Windows, Linux, Macintosh, PDA

line Home  |  About Us  |  Link To Us  |  FAQ  |  Contact

Serving Software Downloads in 956 Categories, Downloaded 49.485.409 Times

Kevin James Bio freeware
Filter: All | Freeware | Demo
 

Kevin James Bio

< 1 2 3 4 5 > 
Added: August 02, 2010 | Visits: 891

Bio::NEXUS::HistoryBlock Bio::NEXUS::HistoryBlock is a Perl module that represents a HISTORY block of a NEXUS file. SYNOPSIS $block_object = new Bio::NEXUS::HistoryBlock(history, $block, $verbose); This is a class representing a history block in NEXUS file METHODS new Title : new Usage : block_object = new...



Platforms: *nix

License: Freeware Size: 153.6 KB Download (99): Bio::NEXUS::HistoryBlock Download

Added: February 01, 2010 | Visits: 1.018

Bio::Ontology::Relationship Bio::Ontology::Relationship is a relationship for an ontology. SYNOPSIS $rel = Bio::Ontology::Relationship->new( -identifier => "16847", -subject_term => $subj, -object_term => $obj, -predicate_term => $pred ); This is a basic implementation of Bio::Ontology::RelationshipI. The...





Platforms: *nix

License: Freeware Size: 4.7 MB Download (103): Bio::Ontology::Relationship Download

Added: July 21, 2010 | Visits: 718

Bio::Ontology::GOterm Bio::Ontology::GOterm is a representation of GO terms. SYNOPSIS $term = Bio::Ontology::GOterm->new ( -go_id => "GO:0016847", -name => "1-aminocyclopropane-1-carboxylate synthase", -definition => "Catalysis of ...", -is_obsolete => 0, -comment => "" ); $term->add_definition_references(...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (93): Bio::Ontology::GOterm Download

Added: September 10, 2010 | Visits: 868

Bio::ConnectDots::ConnectDots Bio::ConnectDots::ConnectDots is a top level class for connect-the-dots. SYNOPSIS use Bio::ConnectDots::DB; use Bio::ConnectDots::ConnectDots; my $db=new Bio::ConnectDots::DB(-database=>test, -host=>computername, -user=>usename, -password=>secret); my $cd=my $cd=new...


Platforms: *nix

License: Freeware Size: 102.4 KB Download (87): Bio::ConnectDots::ConnectDots Download

Added: April 10, 2010 | Visits: 713

Bio::AnnotationCollectionI Bio::AnnotationCollectionI is a Perl interface for annotation collections. SYNOPSIS # get an AnnotationCollectionI somehow, eg $ac = $seq->annotation(); foreach $key ( $ac->get_all_annotation_keys() ) { @values = $ac->get_Annotations($key); foreach $value ( @values ) { # value is an...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (89): Bio::AnnotationCollectionI Download

Added: September 26, 2010 | Visits: 752

Bio::Seq Bio::Seq is a sequence object, with features. SYNOPSIS # This is the main sequence object in Bioperl # gets a sequence from a file $seqio = Bio::SeqIO->new( -format => embl , -file => myfile.dat); $seqobj = $seqio->next_seq(); # SeqIO can both read and write sequences; see Bio::SeqIO #...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (93): Bio::Seq Download

Added: April 21, 2010 | Visits: 974

Bio::PrimarySeqI Bio::PrimarySeqI is a Perl Interface definition for a Bio::PrimarySeq. SYNOPSIS # Bio::PrimarySeqI is the interface class for sequences. # If you are a newcomer to bioperl, you should # start with Bio::Seq documentation. This # documentation is mainly for developers using # Bioperl. #...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (86): Bio::PrimarySeqI Download

Added: October 17, 2010 | Visits: 1.174

Bio::Tools::CodonTable Bio::Tools::CodonTable is a bioperl codon table object. SYNOPSIS # This is a read-only class for all known codon tables. The IDs are # the ones used by nucleotide sequence databases. All common IUPAC # ambiguity codes for DNA, RNA and animo acids are recognized. # to use use...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (116): Bio::Tools::CodonTable Download

Added: June 13, 2010 | Visits: 1.137

Bio::Map::CytoMap Bio::Map::CytoMap is a Bio::MapI compliant map implementation handling cytogenic bands. SYNOPSIS use Bio::Map::CytoMap; my $map = new Bio::Map::CytoMap(-name => human1, -species => $human); foreach my $marker ( @markers ) { # get a list of markers somewhere $map->add_element($marker); }...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (112): Bio::Map::CytoMap Download

Added: November 05, 2010 | Visits: 639

Bio::Biblio::Patent Bio::Biblio::Patent is a representation of a patent. SYNOPSIS $obj = new Bio::Biblio::Patent (-doc_number => 1-2-3-4-5); #--- OR --- $obj = new Bio::Biblio::Patent; $obj->doc_number (1-2-3-4-5); A storage object for a patent. See its place in the class hierarchy in...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (90): Bio::Biblio::Patent Download

Added: November 21, 2010 | Visits: 650

Bio::Ontology::Ontology Bio::Ontology::Ontology is a standard implementation of an Ontology. SYNOPSIS use Bio::Ontology::Ontology; # create ontology object my $ont = Bio::Ontology::Ontology->new(-name => "OBF"); # add terms, relationships ... my $bp = Bio::Ontology::Term->new(-name => "Bioperl"); my $obf =...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (91): Bio::Ontology::Ontology Download

Added: January 27, 2010 | Visits: 974

Bio::Factory::SeqAnalysisParserFactoryI Bio::Factory::SeqAnalysisParserFactoryI is a Perl interface describing objects capable of creating SeqAnalysisParserI compliant parsers. SYNOPSIS # initialize an object implementing this interface, e.g. $factory = Bio::Factory::SeqAnalysisParserFactory->new(); # obtain a parser object...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (91): Bio::Factory::SeqAnalysisParserFactoryI Download

Added: September 26, 2010 | Visits: 955

Bio::Location::CoordinatePolicyI Bio::Location::CoordinatePolicyI is an abstract interface for objects implementing a certain policy of computing integer-valued coordinates of a Location. SYNOPSIS # get a location, e.g., from a SeqFeature $location = $feature->location(); # examine its coordinate computation policy print...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (88): Bio::Location::CoordinatePolicyI Download

Added: November 23, 2010 | Visits: 1.171

Bio::Tools::Run::PiseApplication::freak Bio::Tools::Run::PiseApplication::freak is a Perl module. Bio::Tools::Run::PiseApplication::freak Bioperl class for: FREAK Residue/base frequency table or plot (EMBOSS) Parameters: (see also: http://bioweb.pasteur.fr/seqanal/interfaces/freak.html for available values): freak...


Platforms: *nix

License: Freeware Size: 829.44 KB Download (88): Bio::Tools::Run::PiseApplication::freak Download

Added: October 14, 2010 | Visits: 987

Bio::MAGE::Protocol::SoftwareApplication Bio::MAGE::Protocol::SoftwareApplication is a Perl module. SYNOPSIS use Bio::MAGE::Protocol::SoftwareApplication; # creating an empty instance my $softwareapplication = Bio::MAGE::Protocol::SoftwareApplication->new(); # creating an already populated instance my $softwareapplication =...


Platforms: *nix

License: Freeware Size: 460.8 KB Download (92): Bio::MAGE::Protocol::SoftwareApplication Download

Added: October 19, 2010 | Visits: 1.429

Bio::MAGE::Protocol::Software Bio::MAGE::Protocol::Software - Software represents the software used. SYNOPSIS use Bio::MAGE::Protocol::Software; # creating an empty instance my $software = Bio::MAGE::Protocol::Software->new(); # creating an already populated instance my $software =...


Platforms: *nix

License: Freeware Size: 460.8 KB Download (147): Bio::MAGE::Protocol::Software Download

Added: October 04, 2010 | Visits: 1.192

Bio::Genex::Software Bio::Genex::Software is Perl module with methods for processing data from the GeneX DB table: Software. SYNOPSIS use Bio::Genex::Software; # instantiating an instance my $Software = Bio::Genex::Software->new(id=>47); # retrieve data from the DB for all columns $Software->fetch(); #...


Platforms: *nix

License: Freeware Size: 552.96 KB Download (101): Bio::Genex::Software Download

Added: April 11, 2010 | Visits: 704

Bio::PopGen::IO Bio::PopGen::IO contains input individual,marker,allele information. SYNOPSIS use Bio::PopGen::IO; my $io = new Bio::PopGen::IO(-format => csv, -file => data.csv); # Some IO might support reading in a population at a time my @population; while( my $ind = $io->next_individual ) { push...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (98): Bio::PopGen::IO Download

Added: November 22, 2010 | Visits: 881

Bio::Tree::DistanceFactory Bio::Tree::DistanceFactory is a Perl module to construct a tree using distance based methods. SYNOPSIS use Bio::Tree::DistanceFactory; use Bio::AlignIO; use Bio::Align::DNAStatistics; my $tfactory = Bio::Tree::DistanceFactory->new(-method => "NJ"); my $stats =...


Platforms: *nix

License: Freeware Size: 5.6 MB Download (89): Bio::Tree::DistanceFactory Download

Added: January 21, 2010 | Visits: 1.453

Bio::Index::Blast Bio::Index::Blast is a Perl module with indexes Blast reports and supports retrieval based on query accession(s). SYNOPSIS use strict; use Bio::Index::Blast; my ($indexfile,$file1, $file2); my $index = new Bio::Index::Blast(-filename => $indexfile, -write_flag => 1);...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (91): Bio::Index::Blast Download

< 1 2 3 4 5 >