Genetic Similarity Theory

Strudel is a graphical utility designed to help you visualize genetic and physical maps of genomes for comparative purposes. The application aims to let the user examine their data at a variety of different levels of resolution, from entire maps to individual markers, and explore syntenic...

FastSemSim is specially designed as a handy Python-based efficient implementation of a couple of semantic similarity measures. The main target of the project is to enable fast and easy calculation of similarity between proteins and genes using the Gene Ontology

SimPack is specially developed for the research of similarity between concepts in ontologies or ontologies as a whole. Possible other application areas of SimPack include · the investigation of similarity between software source code. For instance to detect changes between classes of...


Platforms: Windows

The binary and source code for this program may be freely modified and redistributed so long as you follow the terms laid out in the Open Song Composer License. Open Song Composer is a free music generator written in Java. It uses a genetic algorithm constraind by music theory to learn from user...


Platforms: Mac

PARI/GP is a widely used computer algebra system designed for fast computations in number theory (factorizations, algebraic number theory, elliptic curves...), but also contains a large number of other useful functions to compute with mathematical entities such as matrices, polynomials, power...


Platforms: Windows

Toolkit for processing genetic data. Currently supports (command-line): Half-IBD (Identity by descent) aka HIRs - between 2 or any number of files (in distances and cM); RAW2PED, PED2RAW conversions; regions of homozygousity and other converters.


Platforms: Mac

Provide a computer environment which will facilitate finding patterns and relationships between chords, scales, intervals, keys in an automated manner. In it's current form it may be used as a music theory educational tool for guitar and piano.


Platforms: Windows, Mac, Linux

? In collaboration with Camrider: one of the country's Finest Rider Training Companies! ? FREE Lite Version of Motorcycle Theory Test (UK) uses the Latest Official DSA highway code revision question data bank in an intuitive, powerful way and i


Platforms: Mac

The script finds a (near) optimal solution to a variation of the "open" M-TSP by setting up a GA to search for the shortest route (least distance needed for each salesman to travel from the start location to unique individual cities and finally to the end location).Each salesman starts at the...


Platforms: Windows, Mac, *nix, Matlab, BSD Solaris

Finds a (near) optimal solution to a variation of the M-TSP by setting up a GA to search for the shortest route (least distance needed for each salesman to travel from the start location to individual cities and back to the original starting place).Each salesman starts at the first point, and...


Platforms: Windows, Mac, *nix, Matlab, BSD Solaris

The algorithm computes the optimal route from a fixed predetermined starting point to all other cities without returning to the starting point. Requirements: - MATLAB 7.6 or higher


Platforms: Windows, Mac, *nix, Matlab, BSD Solaris

This script computes the strategy oddments for two-player zero-sum games of perfect information. It uses a robust, iterative approximation that can handle dominance, non-square payoff matrices, and games without a saddle-point.


Platforms: Windows, Mac, *nix, Python, BSD Solaris

Gambit is a library of game theory software and tools for the construction and analysis of finite extensive and strategic games. Gambit provides: - A graphical user interface, based upon the wxWidgets library, providing a common interface with native look-and-feel across platforms. - A Python...


Platforms: Windows, Mac, *nix, Python, BSD Solaris

Charlemagne is a genetic programming application which aims to be highly configurable and applicable to a broad range of problems.It is written in Python and Lisp and to some degree is extensible in both languages. It features built-in input-output mapping support, but also provides the ability...


Platforms: *nix, Python, BSD

This is a small project aiming to prove a theory that grids can be solved using only the "possible value" method, whereby the numbers are filled in according the condition that that position has only one possible value, in filling this in, possible values matching this number on the same x and y...


Platforms: C and C plus plus

According to shannon theory it is possible to reconstruct a band limited signal from its Fourier components provided it is sampled sufficiently...just to demonstrate this, posting a small example based on that


Platforms: Matlab

The function implement the 1D Walash Transform which can be used in signal processing,pattern recognition and Genetic algorithms. The Formula of 1D Walsh Transform is defined as : N-1 q-1 ---- -- 1 | | b[i](m)*b[q-1-i](u) W(u) = --- / f(m)| | (-1) ,u = 0,...,N-1 N ---- | | m=0 i=0 where for...


Platforms: Matlab

The function implement the 1D Walash Transform which can be used in signal processing,pattern recognition and Genetic algorithms. The Formula of 1D Walsh Transform is defined in mfile


Platforms: Matlab

The function is based on the mathematical treatment of rotating rotors in "Principles of Helicopter Aerodynamics" by Dr. J.Gordon LeishmanThe numerical method does this by using Blade Element Momentum Theory (BEMT) to calculate the inflow along the length of the blade, then using that inflow and...


Platforms: Matlab

The function generates sequency(Walsh) ordered Hadamard matrix useful for image processing, signal processing, genetic algorithms etc.


Platforms: Matlab