Genes
n-genes is a powerful Genetic Algorithms and Programming toolkit written for Java 5. Using advanced object oriented techniques, like generics and introspection, it is one the simplest system to learn and use. N-geness design allows fast coding and a total flexibility. n-genes is an...
Platforms: *nix
License: Freeware | Size: 737.28 KB | Download (115): N-genes Download |
GO::TermFinder is a Perl module that can identify GO nodes that annotate a group of genes with a significant p-value. This package is intended to provide a method whereby the P-values of a set of GO annotations can be determined for a set of genes, based on the number of genes that exist in the...
Platforms: *nix
License: Freeware | Size: 860.16 KB | Download (101): GO::TermFinder Download |
The application loads microarray data (gene expression ratios) and determines which genes are up- or downregulated by a user-defined ratio cut-off level.
For each experiment, lists of differentially expressed genes are computed. Every list will be compared to every other list, and the number of...
Platforms: Windows
License: Freeware | Download (436): Venn Mapper Download |
CoNIFER, also knows as Copy Number Inference From Exome Reads is a Python-based tool that uses exome sequencing data to find copy number variants (CNVs) and genotype the copy-number of duplicated genes.
As exome capture reactions are subject to strong and systematic capture biases between sample...
Platforms: Windows
License: Freeware | Download (411): CoNIFER Download |
Current Comparative Table is a bioinformatics tool for running searches (like BLAST) with large sets of genes.It creates a table that allows you to view many results in many databases and downloads databases daily to ensure the most up-to-date results.
Platforms: Mac, BSD, Linux
License: Freeware | Size: 10.05 MB | Download (47): Current Comparative Table Download |
DAWGPAWS is a suite of command line programs written in Perl that accelerates annotation of genes and transposable elements in plant genomes by automating the process of running annotation programs and facilitating combined evidence annotation curation.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 4.68 MB | Download (44): DAWGPAWS Download |
Disease Gene Profiler (DGP) comprises of a set of (bioinformatics) tools that can be used to identify the genes underlying susceptibility to common multifactorial diseases (such as diabetes, asthma and cancer) using freely available datasources.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 113.65 KB | Download (53): Disease Gene Profiler Download |
EST Express is an open-source, cross-platform web server application that imports sequences from cDNA libraries and provides several layers of annotation based on Entrez Gene to allow the user to highlight useful genes and manage cDNA library projects.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 27.32 MB | Download (45): EST Express Download |
Graphical User Interface for a software used to assess adaptive evolution in protein-coding genes. Makes use of several known bioinformatics software. IMPACT is free software, targeted to the scientific community.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 9.89 MB | Download (43): IMPACT Download |
RssGsc (Rank Sum Statistics for Gene Set Collections) is a bioinformatics tool used to find meaningful gene sets using a ranked list of genes (obtained form an experiment).
Platforms: Windows, Mac, Linux
License: Freeware | Size: 14.85 MB | Download (47): RssGsc Download |
T-RFPred, Terminal-Restriction Fragment Prediction Tool, is a group of Perl scripts that will help researchers to identify the profile peaks of a T-RFLP fingerprint using clone libraries of partially sequenced 16S rRNA genes from the same sample.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 358.87 KB | Download (48): T-RFPred Download |
Cliente de twitter con php y jquery * Auto completado de nombres de usuario * Preview de imágenes subidas * Visualizacion de imágenes en tamaño completo * Visualizacion de perfil de usuarios * Dos interfaces diferentes
Platforms: Windows, Mac, Linux
License: Freeware | Size: 213.05 KB | Download (48): Wootter Download |
In one type of gene expression analysis, fluorescently tagged messenger RNA from different cells are hybridized to a microscopic array of thousands of complimentary DNA spots that correspond to different genes. Illuminated spots emit different color light, indicating which genes are expressed...
Platforms: Matlab
License: Freeware | Size: 4.35 MB | Download (46): DNA MicroArray Image Processing Case Study Download |
The Synonym and Global Translator is a Gaggle Enabled Java program that enables a user to translate between different gene identifiers and find orthologous genes for a number of different species through the use of the BioNetBuilder database server. It is free to use, but is no longer actively...
Platforms: Mac
License: Freeware | Size: 10.24 KB | Download (42): Synonym and Ortholog Translator Download |
Build a gene network! The lac operon is a set of genes which are responsible for the metabolism of lactose in some bacterial cells. Explore the effects of mutations within the lac operon by adding or removing genes from the DNA. Sample Learning Goals: * Predict the effects on lactose...
Platforms: Mac
License: Freeware | Size: 1.14 MB | Download (35): Gene Machine: The Lac Operon Download |
SAMMate, a Graphical User Interface (GUI) RNA-seq analysis pipeline, allows biomedical researchers to quickly process SAM/BAM files and is compatible with both single-end and paired-end sequencing technologies. SAMMate automates some of more standard procedures in RNA-seq analysis. Features:...
Platforms: Mac
License: Freeware | Size: 50.16 MB | Download (35): SAMMate Download |
QTL Reaper analyzes data from progeny of a genetic cross in experimental plants or animals. It seeks the location of genes that affect a heritable trait, and it is specially designed for analysis of gene expression measurements.
Platforms: *nix
License: Freeware | Size: 256 KB | Download (33): QTL Reaper Download |
BVTech Plasmid is DNA plasmid drawing software that you can use to draw circle or linear plasmid maps with double strands or a single strand. You can label the plasmid with genes and restriction sites in different colors, text, and styles. Plasmid map can be highly customized. You can arrange...
Platforms: Windows
License: Freeware | Size: 1.5 MB | Download (587): BVTech Plasmid Download |
BVTech Plasmid is DNA plasmid drawing software that you can use to draw circle or linear plasmid maps with double strands or a single strand. You can label the plasmid with genes and restriction sites in different colors, text, and styles. Plasmid map can be highly customized. You can arrange...
Platforms: Windows
License: Freeware | Size: 1.5 MB | Download (557): Alchemy Help Desk Download |
PGAPy is a wrapper for pgapack, the parallel genetic algorithm library, a powerfull genetic algorithm library by D. Levine, Mathematics and Computer Science Division Argonne National Laboratory. The library is written in C. PGAPy wraps this library for use with Python. The original pgapack...
Platforms: *nix
License: Freeware | Size: 69.63 KB | Download (93): PGAPy Download |