Functional Genomics Bham

PriorsEditor is a general workbench for regulatory region analysis and transcription factor binding site discovery. The program emphasizes the use of positional priors to focus the search for binding sites towards portions of DNA sequences that are considered more likely to contain true...

Language::Functional is a Perl module which makes Perl slightly more functional. SYNOPSIS use Language::Functional :all; print The first ten primes are: , show(take(10, filter { prime(shift) } integers)), "n"; Perl already contains some functional-like functions, such as map and grep. The...

Microbial Genomics Tool or, MGT, for short is a Graphical User Interface instrument that can run on multiple platforms. The main goal of the program is to provide a useful and comprehensive codon analysis via an interactive environment, which can be started up and used easily with as little...


Platforms: Windows

Using super-fast, integrated, high-performance computing algorithms, CLC Genomics Workbench sets a new standard for desktop based reference assembly and de novo assembly of SOLiD, Solexa, 454, and Helicos sequencing data# De novo assembly of Sanger, 454, Solexa, Helicos, and SOLiD data -...


Platforms: Mac

This scrip represents a tool for turning exception handling into functional alternation. try..except clauses make Python source code often clumsy and impact the readablity. This script presents a simple functional approach to work with exceptions and finalizations - applicable in a majority of...


Platforms: Windows, Mac, *nix, Python, BSD Solaris

The purpose of this module is to provide a dictionary and list type that can aid in relational algebra, functional programming, list-oriented programming, and perhaps even code obfuscation.


Platforms: Windows, Mac, *nix, Python, BSD Solaris

Functional Ear Trainer is an ear training program to learn to recognize notes in the context of a key using a method that really works! Traditional ear training progams typically let you guess scales, chords, and intervals "as is". Functional Ear Trainer is different, the user can select a key...


Platforms: Windows

Bugkilla is a set of java tools for the functional test of J2EE Web Applications.Specification and execution of tests will be automated for web front end and business logic layer. One goal is to integrate with existing frameworks and tools.


Platforms: Windows, Mac, Linux

DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV


Platforms: Windows, Mac, Linux

JsFUnit is a Functional and Unit Testing framework for client-side (in-browser) JavaScript. It be based on jsUnit


Platforms: Windows, Mac, Linux

Functional Programming for Python. Provides a small mixin to provide 1) type constraints for named tuples 2) pre/postcondition typechecking for functions 3) syntactical sugar to make your code look pretty (accomplished through a PEP 302 import hook)


Platforms: Windows, Mac, Linux

SHIFT (State-HIerarchy Functional Testing) provides a new way to test your web apps. It extends other web testing frameworks to allow significantly better testing with less effort, and opens up new ways to test which have never been possible before.


Platforms: Windows, Mac, Linux

StoryTestIQ is a tool for creating "Executable Requirements" which have also been known as acceptance tests or functional tests. STIQ was developed based on two other open source acceptance testing tools, Selenium and FitNesse. This combination allowed StoryTestIQ to capture the web browser...


Platforms: *nix

glucopy-glurestore is a set of scripts for copying and restoring a fully functional GNU/Linux (or other Unix-like) system. The glucopy script will back up all system content (system and user files), while the glurestore script will partition and format an identical system, restore the system...


Platforms: *nix

Dial-Up Bot project aims to be a fully functional automated replacement for the /etc/ppp/ip-{up,down}.d hierarchy. Its supposed to be started by cron at night. It cant satisfy the requirements of impatient roots. Its not designed for hosts with a permanent Internet connection. Whats New in This...


Platforms: *nix

PloneSelenium provides a product for web-based functional tests. PloneSelenium is a Plone Product allowing developers to create TTW Selenium test suites with a single Python Script, in order to do browser-based functional testing of their site. Once you have developped the tests with...


Platforms: *nix

Fishkill is a minimalist functional programming language. Some might call it a toy language. The project is based entirely on pattern matching of function arguments. There are no data types (or you might say there is a single data type). Instead, arbitrary constructors can be defined by just...


Platforms: *nix

SMUSHcode project is a functional (as opposed to procedural) scripting language interpreter, written in Java. Completely documentated. SMUSHcode started life in 1997 as a term project for a "Compilers and Translators" class. Originally written in C++, it was conceived as a functional (as...


Platforms: *nix

EJBCA is a fully functional Certificate Authority in Java using J2EE technology. EJBCA builds on the J2EE platform to create a robust, high performance, platform independent, flexible, and component-based CA to be used standalone or integrated in any J2EE app. EJBCA comes with a flexible and...


Platforms: *nix

An award winning, integrated on-line learning environment where users experience the world of biology through discovery-based learning. GDL was developed as a series of curriculum-aligned and integrated games, modules, and interactive simulations covering an array of topics in biology. To meet...


Platforms: Mac