Folding Shelf Bracket

Orimage is a editor/browser specialized in origami diagrams (paper folding).Users could draw their diagrams in multiple ways, called moded.

prot3d is aimed to get three-dimensional folding possibilities of a peptide given its aminoacid sequence.

The software implements a fast optimal co-folding of pairs of RNA sequences. The algorithm is described in details in the paper 'A faster algorithm for RNA co-folding' by Ziv-Ukelson, Gat-Viks, Wexler, and Shamir.


Platforms: Windows, Mac, Linux

UNFOLDPROTEIN(data, bracket) calculates the melting temperature, Tm, of a protein from a given Nx2 array of unfolding data (with N >= 10). In the case of unfolding studies performed using circular dichroism spectroscopy, the second Tm calculated using the maximum of the first derivative of the CD...


Platforms: Matlab

Revision of the version inspired by Jason Breslau, through inspection of the list of special words from http://www.mathworks.com/access/helpdesk/help/techdoc/index.html?/access/helpdesk/help/techdoc/ref/funcalpha.html ://http://www.mathworks.com/access/hel...funcalpha.html which however also...


Platforms: Matlab

This contest concerns a very simplified two-dimensional version of the protein folding problem. Given the amino acid sequence of a simplified protein, your job is to determine a final "optimally folded" configuration. Each potential arrangement of the protein sequence is associated with an energy...


Platforms: Matlab

WP-Plurk is a plugin to put a post to your Plurk account everytime you publish a blog post. All you have to do is setup this plugin, enter your username and plurk password and a post template.About Post TemplateThe post template has a certain format 1. Plurk qualifier (verbs) must be in the first...


Platforms: PHP

WP Editarea turns your Oldschool textarea code editor in Wordpress Dashboard (plugin/theme editor) into a fancy realtime highlighted code editor using Editarea.Plugin Feature * Automatically detect syntax language * Live preview in plugin option page * Better than codepress (cPanel also use this)...


Platforms: PHP

Commentwitter is a WordPress plugin that gives commenters the option of Tweeting their comment with a link to your post.Other features * Automatically creates bit.ly to specific comments in a post * Integrates nicely into forms * Blog owner can Tweet new comments automatically on their profile *...


Platforms: PHP

Xcode plug-in to perform automatic pairing of message brackets XcodeBracketMatcher is an open source Xcode plug-in which will make writing Objective-C easier, by automatically inserting paired message sending brackets. Installation: 1. Open the project and build the plug-in (or download and...


Platforms: Mac

pknotsRG is a tool for folding RNA secondary structures, including the class of simple recursive pseudoknots. The program runs in O(n^4) time and O(n^2) space, therefore its application here on the BiBiserv is limited to sequences of length up to 800 bases. The energy parameters for structures...


Platforms: Mac

View, print, and review all types of eDrawings files, supported AutoCAD?*A* files and SolidWorks parts, assemblies and drawings Download free eDrawings Viewer software for the Mac to view, print, and review all types of eDrawings files. In addition, eDrawings Viewer allows convenient viewing of...


Platforms: Mac

MyVinyl is the most intuitive way to keep track of your ever-expanding record collection. * Add albums manually or automatically * Save album art with each record * Edit the track list to remember which songs are on which albums * Keep a "want" list as well as a "have" list * Store an...


Platforms: Mac

This script works in tandem with the 'bbedit' command line binary (which should already be installed and functional). The intention is for this script to be accessed from the currently active Finder window and acts on the current directory in the Finder. I suggest adding this script to the a...


Platforms: Mac

Turbo Pad is a fast and feature rich text editor. It includes a tabbed interface, syntax highlighting, syntax folding, bookmarking, unlimited undo/redo, code templates, word completion and much more. It is written using Scintilla and wxWidgets.


Platforms: *nix

GNOME Clipboard Manager is an environment made for managing your clipboards. It will automatically fetch new clipboards, and will push all the formats of that clipboard to a shelf


Platforms: *nix

Maya2OSG is a toolkit to export or import Autodesk?*A* Maya?*A* scenes or models to/from any OpenSceneGraph (OSG) supported file format. Maya2OSG has been developed in C++ and released under GNU GPL v3. It installs as a Maya plug-in and is available from easy-to-use Shelf buttons. For more...


Platforms: *nix

Castadiva is a test-bed solution that allows to generate wireless scenarios using low cost commercial-of-the-shelf devices combined with the power of Linux tools. Castadiva allows to generate a network topology, export it to real devices and obtain the results of the test. Can also generate...


Platforms: *nix

Pymbolic is a small symbolic manipulation library. Two things set it apart from other libraries of its kind: * Users can easily write their own symbolic operations, simply by deriving from the builtin visitor classes. * Users can easily add their own symbolic entities to do calculations with....


Platforms: *nix

Hades is a near-line archive system, made to fill a niche between a fileserver (online) and a shelf full of CDs or DVDs (offline). An archive system lets you keep your fileserver with only those files needed for current work; all the old filesets are archived out of sight. Hades doesn't present...


Platforms: *nix