Exome

CoNIFER, also knows as Copy Number Inference From Exome Reads is a Python-based tool that uses exome sequencing data to find copy number variants (CNVs) and genotype the copy-number of duplicated genes. As exome capture reactions are subject to strong and systematic capture biases between sample...


Platforms: Windows

Copy Number Analysis for Targeted Resequencing (CONTRA) is a tool for copy number variation (CNV) detection for targeted resequencing data such as those from whole-exome capture data.


Platforms: Mac, Linux