Entrez

This program is a parser that abstract a data structure from a given Entrez Gene record, and users of the parser can decide what to do/extract from the data structure. Perl Entrez Gene Parser project provides Perl parsers for NCBI's Entrez Gene based on regular expression, Parse::RecDescent,...


Platforms: Windows, Mac, *nix, Perl, BSD Solaris

Perl Entrez Gene Parser project provides Perl parsers for NCBI's Entrez Gene based on regular expression, Parse::RecDescent, Parse::Yapp and Perl-byacc. Some can parse human genome annotations in minutes. Documentation and user guides are provided.


Platforms: Windows, Mac, Linux

The Entrez Widget provides a quick access to the NCBI Databases. You just have to enter your search terms and the result will be displayed in a new browser window.


Platforms: Mac

EST Express is an open-source, cross-platform web server application that imports sequences from cDNA libraries and provides several layers of annotation based on Entrez Gene to allow the user to highlight useful genes and manage cDNA library projects.


Platforms: Windows, Mac, Linux

As part of implementation of CMS for Biomedical applications, it is often a requirement to display publications from well known databases. One such database is called PubMed which is provided National Center for Biotechnology Information, National Library of Medicine and National Institutes of...


Platforms: PHP

This module allows to import PubMed articles by ID and by Search term into the biblio database. Moderated mass retrieval per Batch API and cronjob as well as automatic updates in cron makes it a valuable addition to the biblio module.Built mostly by agaric on behalf of the Science Collaboration...


Platforms: PHP

The CL!Psci Scientific Search Engine is a superfast and efficient, free Google-like software, designed to meet the specialized and intensive, web-based information need of the researcher scientist. * Customize a menu of your most commonly used scientific search engines * Right-click on a word or...


Platforms: Windows

DNAGalaxy is an attempt to produce an open-source bioinformatics software alternative to the expensive DNAStar Lasergene software. Its features currently include Blast and Entrez searching, a frontend to clustal and a sequence editor. It requires java1.5


Platforms: Windows, Mac, Linux

MGWT: Identification of protein coding regions using the ModifiedGabor-wavelet transform.Sequence of test:F56F11.4.fasta (included into the zip file)http://www.ncbi.nlm.nih.gov/entrez/viewer....de&val=AF099922http://www.vision.ime.usp.br/~jmena/projec...ome_results/F5/References:[1] J. P....


Platforms: Matlab