Dna Sequencing Analysis

iMethy is a handy, easy to use genome-wide DNA methylation analysis and visualization application based on next generation sequencing. Firstly, it holds the command-line pipeline to align the bisulfite-treated short read, identify the methylcytosine at CG/CHG/CHH sites, detect the methylation... Platforms: Windows

Have you ever needed to generate easy to read Quality Reports for your DNA sequencing? Have you ever needed to sort your DNA trace files by quality? Have you ever needed to change the comments tag in your Chromatograms? If so, this software suite is for you. This bundle includes: Mac Sequence... Platforms: Mac

Tracetuner is a tool for base and quality calling of trace files from DNA sequencing instruments. Originally developed by Paracel, this code base was released as open source in 2006 by Celera. Platforms: *nix

This 30 days fully functional demo of CLC DNA Workbench provides a wide range of advanced DNA sequence analyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench. Some analyses are: - Assembly of DNA sequencing data - Graphically and... Platforms: Mac

EnzymeX is a program for molecular biologists, developed to help you determine which restriction enzymes you should use to cut your DNA of interest. It now is a complete DNA sequence analysis and editing program, which contains powerful and unique features and is above all user friendly. Never... Platforms: Mac

Have you ever gotten frustrated with your DNA sequence analysis program because it didn't do a few things that you needed it to? Now, if you can code (or convince someone else to code for you), you can make 4Peaks go that extra distance for you. By making a plugin, you can get 4Peaks to send your... Platforms: Mac

WRITESCF writes SCF formatted files.SCF format files are used to store data from DNA sequencing instruments. This version of WRITESCF only adds the raw traces to the SCF files, it does not write the bases or scores. Platforms: Matlab

dnaLIMS is a state-of-the art web based laboratory information management system used to track and manage core facility workflow in high throughput environments. Its database and process flow can be customized to your core facility requirements. dnaLIMS process flow is used to capture DNA... Platforms: Mac

Binary fills your screen with scrolling 1s and 0s, with a font and speed of your choice. Binary also supports DNA sequencing, which scrolls C/G/A/T instead of 1 and 0. Make sure to use a fixed-width font like Courier New, or it will look really bad. A great font to use with Binary is SF Digital... Platforms: Windows

BSmapper - Sequence mapper for bisulfite sequencing reads for DNA methylation studies. Can handle Sanger and 454 reads for mapping to whole genomes or target regions. Platforms: Mac

In one type of gene expression analysis, fluorescently tagged messenger RNA from different cells are hybridized to a microscopic array of thousands of complimentary DNA spots that correspond to different genes. Illuminated spots emit different color light, indicating which genes are expressed... Platforms: Matlab

Stock Price Analysis provide a free web based stock price analysis module. The easy to use interface incorporates Fundamental Analysis to calculate: Fair Value stock price; comparative stock Value; profit Target sell price; Stop Loss sell price; Price Earnings Ratio (PE) for Fair Value and Buy... Platforms: Windows, Mac

BASE is the Basic Analysis and Security Engine. It is based on the code from the Analysis Console for Intrusion Databases (ACID) project. This application provides a web front-end to query and analyze the alerts coming from a SNORT IDS system. BASE is a web interface to perform analysis of... Platforms: *nix

Market Analysis System (MAS) is an open-source software application that provides tools for analysis of financial markets using technical analysis. Market Analysis System provides facilities for stock charting and futures charting, including price, volume, and a wide range of technical analysis... Platforms: *nix

Directory Analysis Tool is used to analyze LDAP directories and report on their contents. Useful if you want to find inactive accounts, people who havent changed passwords, or who has administrator privileges.. Platforms: *nix

TA-Lib provides common functions for the technical analysis of stock/future/commodity market data. TA-Lib can be reused by trading software developers using Excel, .NET, Java, Perl or C/C++.. Technical analysis open-source software library to process financial data. Provides RSI, MACD,... Platforms: *nix

Statistical Traffic Analysis Kit is a set of command-line traffic analysis tools, designed to help a network administrator to see what is happening at a router at the moment. Unlike tcpdump (1), the stak set uses statistical and stream-oriented methods, and will rarely produce an output stream... Platforms: *nix

The Analysis & Reconstruction Sound Engine also known as ARSE, is a program that analyses a sound file into a spectrogram and is able to synthetise this spectrogram, or any other user-created image, back into a sound. The ARSE consists in two main parts, a spectrographer with a base-2... Platforms: *nix

Plucene::Analysis::PorterStemFilter - Porter stemming on the token stream. SYNOPSIS # isa Plucene::Analysis:::TokenFilter my $token = $porter_stem_filter->next; This class transforms the token stream as per the Porter stemming algorithm. Note: the input to the stemming filter must... Platforms: *nix

Sequence Analysis project is a collage of coding projects which I have written over the past several years for various clients in my work as a bioinformatics consultant. These clients have graciously allowed me to release these works into the public domain as freeware for Macintosh OS X in... Platforms: *nix