Dna Extraction Methods

B::OptreeShortestPath is a Perl module that adds the methods ->shortest_path( $op ) and ->all_paths() to all B::OP objects in an optree. SYNOPSIS use B qw( main_root main_start ); use B::OptreeShortestPath; for ( main_start()->shortest_path( main_root() ) ) { print "$_n"; } METHODS...

XML::SAX2Perl is a Perl module to translate Perl SAX methods to Java/CORBA style methods. SYNOPSIS use XML::Perl2SAX; $perl2sax = XML::Perl2SAX(handler => $java_style_handler); XML::Perl2SAX is a SAX filter that translates Perl style SAX methods to Java/CORBA style method calls. This...

Textbender project is a toolkit for collaborative authoring based on structures and methods derived from nature. Structures include a genetic code, populations, and a gene pool. A text is encoded with genetic markup and then distributed out to writers to form a population of copies and a gene...


Platforms: *nix

Class::Method::hash is a Perl module that helps you create methods for handling a hash value. SYNOPSIS use Class::MethodMaker [ hash => [qw/ x /] ]; $instance->x; # empty $instance->x(a => 1, b => 2, c => 3); $instance->x_count == 3; # true $instance->x = (b => 5, d => 8); # Note this...


Platforms: *nix

B::More Perl module contains additional introspection methods and functions. Adds stuff I needed in B and wasnt there. Feel free to email me with suggestions for other methods I can add. B::SV METHODS svref Inverse of B::svref_2object. B::PVMG METHODS magic Returns a string...


Platforms: *nix

Nift is graphical front-end for footprinting tools and methods already freely avaliable. Its purpose is to aid system administrators in securing their websites by allowing them to quickly check their network.. Get Nift at SourceForge.net. Fast, secure and free downloads from the largest Open...


Platforms: *nix

XML::LibXML::Enhanced is a Perl module that adds convenience methods to XML::LibXML and LibXSLT. SYNOPSIS use XML::LibXML::Enhanced; my $xml = XML::LibXML::Singleton->instance; my $xsl = XML::LibXSLT::Singleton->instance; my $doc = $xml->parse_xml_string(" "); my $root =...


Platforms: *nix

CodeSugar Eclipse Plugin is an Eclipse plugin that can generate methods such as equals(), clone(), toString(), and hashCode() for Java classes. Whats New in This Release: - This release includes many feature enhancements in generated code, as well as UI refinements like enabling actions in...


Platforms: *nix

Ogmtools allow information about (ogminfo) or extraction from (ogmdemux) or creation of (ogmmerge) OGG media streams. Installation is very simple to do. Run ./configure followed by make and make install. If, for some reason, there is no configure script then run ./autogen.sh which will recreate...


Platforms: *nix

Diggernaut is a cloud based service for web scraping, data extraction and other ETL (Extract, Transform, Load) tasks. If you are a reseller of goods and your supplier does not let you have their data in a suitable format, such as excel or csv, you will have to manually retrieve data from their...


Platforms: Windows, Windows 8, Windows 7, Windows Server

MyCGR is an Objective-Caml library and a collection of tools to use the Chaos Game Representation on DNA sequences. MyCGR can empirically check the level and power of the tests and apply them on DNA sequences. It can generalize the dinucleotide abundance profile to a CGR-based relative...


Platforms: *nix

SVG::DOM is a Perl library with DOM (Document Object Model) methods for SVG objects. SVG::DOM provides a selection of methods for accessing and manipulating SVG elements through DOM-like methods such as getElements, getChildren, getNextSibling and so on. Currently only methods that provide...


Platforms: *nix

ImplicitThis is a syntactical sugar for OO methods. SYNOPSIS use ImplicitThis; ImplicitThis::imply(); sub new { my $type = shift; my %args = @_; # must be blessed hash object bless { foo => $args{foo}, bar => $args{bar}, }, $type; } sub my_accessor { # $this is read for us. $bar...


Platforms: *nix

MIDI::Opus are functions and methods for MIDI opuses. SYNOPSIS use MIDI; # uses MIDI::Opus et al foreach $one (@ARGV) { my $opus = MIDI::Opus->new({ from_file => $one, no_parse => 1 }); print "$one has ", scalar( $opus->tracks ) " tracksn"; } exit; MIDI::Opus provides a constructor and...


Platforms: *nix

CompBio::DB is a Perl module with methods for accessing data stored according to the CompBio base schema. SYNOPSIS use CompBio::DB; my $cbdb = CompBio::DB->new({host => "foo.bar.edu"); my $AR_defs = $cbdb->get_annotation([keys %seqs]); Example code for parsing the return for a simple...


Platforms: *nix

Application::Pipeline is a module designed to map methods ( referred to in this role as handlers ) to different phases of an applications life cycle. By assigning methods to different phases of this pipeline, the author can concentrate on the logic for each phase and let the framework manage the...


Platforms: *nix

Timestamp::Simple is a Perl module with simple methods for timestamping. SYNOPSIS use Timestamp::Simple qw(stamp); print stamp, "n"; This module provides a simple method for returning a stamp to mark when an event occurs. METHODS stamp() This method returns a timestamp in the form...


Platforms: *nix

Pod::WSDL::Doc is a Perl module that represents the WSDL pod for the documentation of methods (internal use only). SYNOPSIS use Pod::WSDL::Doc; my $doc = new Pod::WSDL::Doc(_DOC This method is for blah ...); This module is used internally by Pod::WSDL. It is unlikely that you have to...


Platforms: *nix

WordNet::Similarity::PathFinder is a Perl module to implement path finding methods (by node counting) for WordNet::Similarity measures of semantic relatedness. SYNOPSIS use WordNet::QueryData; my $wn = WordNet::QueryData->new; use WordNet::Similarity::PathFinder; my $obj =...


Platforms: *nix

Logrep is a secure multi-platform framework for the collection, extraction, and presentation of information from various log files. It features HTML reports, multi dimensional analysis, overview pages, SSH communication, and graphs, and supports over 30 popular systems including Snort, Squid,...


Platforms: *nix