Dna Extraction Methods

BlogTEX is an ad-hoc blog posts extraction algorithm written in Java for TREC Blog08 dataset. It includes an optimized sentence model for clearly identifying sentence boundaries in each blog post. Its output can be customized using its config file.

Brahmi project aims at producing Java Input Methods and OpenType fonts for Indian languages. They are bundled with Brahmi - Word Processor which installs the fonts, Input Methods and font.properties files

DNA is an open, flexible and extensible deep network analyzer software server and software architecture for gathering and analyzing network packets, network sessions and applications protocols, passively off enterprise class networks.


Platforms: Windows, Mac, Linux

DNA Replicator is a graphical tool (written in java) that compute the complementary sequence from an input DNA sequence. It's a really easy used application.


Platforms: Windows, Mac, Linux

The National Library of New Zealand's Metadata Extraction Tool automatically extracts preservation-related metadata from digital files, then output that metadata in XML formats. It can be used through a graphical user interface or command-line interface


Platforms: Windows, Mac, Linux

OMEN (On-demand Metadata Extraction Network) is a tomcat based system that allows external users (music information researchers) to request from participating libraries the extraction of features from music archives without violating copyright.


Platforms: Windows, Mac, Linux

Phoenix is an information extraction engine written in java. Controlled by rules (declared in xml), it extracts information form any XML document (unstructured XHTML/OpenOffice documents). Supports XPath, additional conditions and top-down decomposit


Platforms: Windows, Mac, Linux

T-Rex (Trainable Relation Extraction) is a highly configurable machine learning-based Information Extraction from Text framework, which includes tools for document classification, entity extraction and relation extraction.


Platforms: Windows, Mac, Linux

A common way to create new compound widgets is to inherit Frame, create everything you need inside it and pack this base Frame on your application.This script is an alternative to this method, that sets geometry methods and options from a wiget to another.


Platforms: Windows, Mac, *nix, Python, BSD Solaris

Five methods for converting a signal to a binary representation. Methods outlined in Arthur Petrosian, "Kolmogorov Complexity of finite sequences and recognition of different preictal eeg patterns".Methods are:1. average method: sample assigned 1 if above the signal average2. modified zone...


Platforms: Matlab

In one type of gene expression analysis, fluorescently tagged messenger RNA from different cells are hybridized to a microscopic array of thousands of complimentary DNA spots that correspond to different genes. Illuminated spots emit different color light, indicating which genes are expressed...


Platforms: Matlab

The Getfem++ project focuses on the development of a generic and efficient C++ library for finite element methods elementary computations. The goal is to provide a library allowing the computation of any elementary matrix (even for mixed finite element methods) on the largest class of methods and...


Platforms: Mac

Explore stretching just a single strand of DNA using optical tweezers or fluid flow. Experiment with the forces involved and measure the relationship between the stretched DNA length and the force required to keep it stretched. Is DNA more like a rope or like a spring?


Platforms: Mac

PDF to text file converter that allows extracting text from a batch of PDF files. PDF2Text Pilot is an open-source tool. Software developers can use the code as an example of solving a text extraction task. Working from command line is supported.


Platforms: Windows

GNU Ocrad is an OCR (Optical Character Recognition) program implemented as a filter and based on a feature extraction method. Also includes a layout analyser able to separate the columns or blocks of text normally found on printed pages. Ocrad can be used as a stand-alone console application,...


Platforms: *nix

Bio::Restriction::Enzyme is a single restriction endonuclease (cuts DNA at specific locations). SYNOPSIS # set up a single restriction enzyme. This contains lots of # information about the enzyme that is generally parsed from a # rebase file and can then be read back use...


Platforms: *nix

WebService::MusicBrainz is a Perl module that will act as a factory using static methods to return specific web service objects. SYNOPSIS use WebService::MusicBrainz; my $artist_ws = WebService::MusicBrainz->new_artist(); my $track_ws = WebService::MusicBrainz->new_track(); my $release_ws...


Platforms: *nix

Tk::PerlMethodList is a Perl module to query the Symbol-table for methods (subroutines) defined in a class (package) and its parents. SYNOPSIS require Tk::PerlMethodList; my $instance = $main_window->PerlMethodList(); Tk::PerlMethodList is a Tk::Toplevel-derived widget. The window...


Platforms: *nix

Set::Hash is a Perl module with hashes as objects with lots of handy methods (including set comparisons) and support for method chaining. SYNOPSIS use Set::Hash; my $sh1 = Set::Hash->new(name=>"dan",age=>33); my $sh2 = Set::Hash->new(qw/weight 185 height 72/); $sh1->length->print; # 2...


Platforms: *nix

ulxmlrpcpp is a library to call methods on a remote server. ulxmlrpcpps main goal is to be as easy to use as possible but be fully compliant. It is object oriented and written in C++. ulxmlrpcpp is a library to perform calls via XML-RPC in an object oriented approach implemented in C++. It is...


Platforms: *nix