Cutter Sequence

Bio::AlignIO::bl2seq is a bl2seq sequence input/output stream. SYNOPSIS Do not use this module directly. Use it via the Bio::AlignIO class, as in: use Bio::AlignIO; $in = Bio::AlignIO->new(-file => "inputfilename" , -format => bl2seq); $aln = $in->next_aln(); This object can create...

Bio::AlignIO::msf is a Perl module with msf sequence input/output stream. SYNOPSIS Do not use this module directly. Use it via the Bio::AlignIO class. This object can transform Bio::Align::AlignI objects to and from msf flat file databases. The rest of the documentation details each of...

Bio::SeqIO::fastq is a fastq sequence input/output stream. SYNOPSIS Do not use this module directly. Use it via the Bio::SeqIO class. This object can transform Bio::Seq and Bio::Seq::SeqWithQuality objects to and from fastq flat file databases. Fastq is a file format used frequently at...


Platforms: *nix

Algorithm::NeedlemanWunsch is a sequence alignment with configurable scoring. SYNOPSIS use Algorithm::NeedlemanWunsch; sub score_sub { if (!@_) { return -2; # gap penalty } return ($_[0] eq $_[1]) ? 1 : -1; } my $matcher = Algorithm::NeedlemanWunsch->new(&score_sub); my $score =...


Platforms: *nix

MP3 Cut is an easy and efficient FREE MP3 Cutter. Cut MP3 files into specified length clips. Cut MP3 songs into equal-length sections. Cut MP3 music into specified size parts. Cut MP3 section whose start and end points are specified by user. It can copy & save audio tag from the source...


Platforms: Windows

This is a mp3 cutter software, which can cut audio clips out of audio/video files (mp3/mp4), then export to mp3 files. It can add fade-in/fade-out effects at the beginning/end of the output file. These effects are able to make the output files sound smooth. Also, NowSmart Cut Free enables...


Platforms: Windows

SeqEntropy was designed as an accessible, easy-to-use and handy assessment instrument of sequence repeats for short read sequencing. Now you can access and make use of this useful tool directly from the Command Line Interface found in your system.


Platforms: Windows

ProtAnnot is a small, Java based application is a protein annotation viewer that displays protein annotations in the context of the genomic sequence. This software is a making it easy to see how alternative mRNA structures affect the various protein products encoded at a locus. for WindowsAll


Platforms: Windows

The FastPCR software was developed to be an integrated tools environment that provides comprehensive facilities for designing primers for most PCR applications including standard, long distance, inverse, real-time, multiplex, unique and group-specific; overlap extension PCR (OE-PCR)...


Platforms: Windows, XP, 2003, Windows Vista, XPX64, 7, 7x64

Oligomer is a small, simple, Java based application specially designed to help you perform sequence analysis with standard and mixed bases. This tool will also help you find out the physical properties of the sequence, so that you get a complete bio-informatics software. for WindowsAll


Platforms: Windows

UGENE is a comprehensive genome analysis suite that features multiple sequence alignment and a complex HMM builder and search module. for WindowsAll


Platforms: Windows

ClaMS is a handy application specially designed to offer you a sequence composition-based classifier for metagenomic sequences. ClaMS works by capturing signatures of each sequence based on the sequence composition. Each sequence is modeled as a walk in a de Bruijn graph with underlying Markov...


Platforms: Windows

Artemis is a free genome browser and annotation tool that allows visualisation of sequence features, next generation data and the results of analyses within the context of the sequence, and also its six-frame translation. Artemis is written in Java, and is available for UNIX, Macintosh and...


Platforms: Windows, Mac, Linux, Java

ABySS-Explorer is an interactive Java application that employs a novel graph-based representation to display a sequence assembly and associated meta data. The tool was designed with the ABySS sequence assembler in mind and was motivated by the need to examine assembly structure, in particular...


Platforms: Windows

ApneaStaticTrainer is a small, easy to use, handy application specially designed to help you create breath hold sequence for free diving trainings. Basically this tool will help you build O2 and CO2 tables for apnea trainnig and save them as MP3 files. So, if you were looking for a program...


Platforms: Windows

KeyPressList is a simple, easy to use tool designed to emulate pressing a sequence of keys to the foreground window. Each line from input file represents a key combination such as ALT-TAB or CONTROL-SHIFT-A or ...each key has a programmable pre-press delay.


Platforms: Windows

LSC Editor is designed to be a graphical editor and code generator for Live Sequence Charts (LSCs). The code generated follows a simple execution mechanism. It shows a possible execution path. for WindowsAll


Platforms: Windows

Msc-generator is an easy to use, simple tool designed to enable you to draw Message Sequence Charts for telecommunication applications from textual description. Message Sequence Charts (MSCs) are a way of representing entities and message interactions over some time period and are often used in...


Platforms: Windows, XP, Windows Vista, 7

Mallard is a handy, Java based application based on the Pintail algorithm designed to work by comparing evolutionary distances between a query and subject sequence over the length of the 16S rRNA gene (small subunit rRNA), by employing a sampling window of specified size, progressing a fixed...


Platforms: Windows

rphMPFE is a simple, easy to use GUI front-end specially designed for MPlayer with flow view and tool like media cutter. This app can play audio, video, dvd files(.vob), vcd files(.mpg, .dat) etc. and supports network streaming. It supports subtitles, subtitle decoding is done by using ass...


Platforms: Windows